Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 132 4e-26
seq8 131 2e-25
seq19 125 6e-24
seq3070 107 2e-18
seq15 84.2 2e-11
>seq1388
Length=1638
Score = 132 bits (146), Expect = 4e-26
Identities = 169/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567
|||||||||||| | | ||| | ||| | ||| ||| || || |||||||||||||
Sbjct 300 TTCCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGG 359
Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627
| ||| || |||| || ||||||||||| || || || | || |||||||||| ||
Sbjct 360 AGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAG 419
Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686
||| | ||||||||| ||| ||| | ||||| | | | | || || ||||||
Sbjct 420 GAATACCTTCCTTGTCC-TGAATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCC 478
Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || | |||||||| ||||| |||| ||||||||| ||||| |||||
Sbjct 479 ACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || ||||||||||||| | || || |||| || ||||||||||| || ||
Sbjct 109 CTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 168
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||||| || | || ||||| ||| ||||| ||| | |
Sbjct 169 GATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGAATCTTAGTCTTGACGTT 228
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| ||||||||||| | || || || || || || | || |||||
Sbjct 229 CTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTTCAC 288
Query 35725 AAATATCTGCATTC 35738
|| ||||||||||
Sbjct 289 GAAAATCTGCATTC 302
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567
|||| || || | | || ||| | ||| | ||| |||||||| |||||||| || |
Sbjct 756 TTCCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 815
Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627
|| ||| || |||| || || |||||||| || || || | ||||||||||||| |
Sbjct 816 ACAGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGG 875
Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687
| | || ||||| ||| ||||| ||||| | | | |||||| || || |
Sbjct 876 GGATGCCTTCCTTATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAA 935
Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738
| || | ||||| || || || || || || || || || ||||||||||
Sbjct 936 CTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATTC 986
>seq8
Length=1068389
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||||||| || ||| || | || |||||||||||||| |||||
Sbjct 632029 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 631970
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | |||| || |||||||||| ||||| ||||| | |
Sbjct 631969 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACATT 631910
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || ||||| || || ||||| | |||||||| || || |||| || |||||
Sbjct 631909 GTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAGGGTCTTCAC 631850
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 631849 GAAGATCTGCAT 631838
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| | ||| || | || || |||||||| || |||||
Sbjct 631573 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 631514
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||||| |||| | |||||| ||| |||||| ||| | | |
Sbjct 631513 GATCAAGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTCGACTTGACATT 631454
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
| | ||||| || |||||||| | ||||| || || || ||
Sbjct 631453 GTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGT 631406
Score = 89.7 bits (98), Expect = 5e-13
Identities = 124/171 (73%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||| || |||| || |||||||| || || ||
Sbjct 631291 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 631232
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||||| || | || |||||| ||| |||||| ||||| ||
Sbjct 631231 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGACTTCA-CGT 631173
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714
|| | | || || || || ||||| | ||||| || || |||||||
Sbjct 631172 TGTCGATAGTATCCGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTCA 631122
>seq19
Length=502728
Score = 125 bits (138), Expect = 6e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || |||||||| || |||||||| ||| |
Sbjct 172574 CCACCACGGAGGCGGAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 172633
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || || ||||||||||| ||||| || | ||||||||||||| ||
Sbjct 172634 AGAGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 172693
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| || |||||||||| |||||| ||| | |||| | | |||||| || |||||
Sbjct 172694 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 172752
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||| | |||||||| || ||||| | || || || || ||||||||
Sbjct 172753 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 172800
>seq3070
Length=537
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||| | ||||| ||| |||||| ||||||||||| |||| |
Sbjct 251 CCACCACGAAGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 192
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || || || ||||| ||||| |||||||| || | |||||||| |||| ||||
Sbjct 191 AGAGTGCGGTCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGA 132
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGC-CACCGTGTCGCTCGATTCCAC 35688
| | ||||||||| ||||| ||||| | |||| | | ||| || || ||
Sbjct 131 ATTCCTTCCTTGTCCTGAATCTTGGTCTTCACA-TTGCTGATGCTATCGGATGACTCTAC 73
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || || | ||||| || || ||||||||
Sbjct 72 TTCGAGAGTGATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25
>seq15
Length=666898
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | || || | || || |||||||| || || || |
Sbjct 143566 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 143507
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| ||||||||||||| || | || |||||||||| |||||| ||| | | |
Sbjct 143506 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 143447
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||| || || ||||| | ||||| || || ||||| | || ||||| |
Sbjct 143446 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 143387
Query 35727 A 35727
|
Sbjct 143386 A 143386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450775269605240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |