Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1388 140 3e-28 seq8 116 4e-21 seq3070 107 2e-18 seq19 102 8e-17 seq5 87.8 2e-12 >seq1388 Length=1638 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || |||| |||||| || || || ||||||||||| ||||||||||| Sbjct 756 TTCCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 815 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| || ||| || || || || || || || || | ||||||||| || || | Sbjct 816 ACAGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGG 875 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || ||||| || || || || | |||||||| || || | Sbjct 876 GGATGCCTTCCTTATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAA 935 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| ||||| || |||||||| || || |||||||| |||||| Sbjct 936 CTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 985 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || || || || |||||||| ||| || ||| || Sbjct 83 AGACGAAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGA 142 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| || || || || || | ||||||||| || || || |||||||| Sbjct 143 CCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCC 202 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| || | |||||||| |||||||| || |||||| Sbjct 203 TTATCCTGAATCTTAGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTA 262 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || || || | || || |||||||| |||||| Sbjct 263 ATGGTCTTTCCAGTAAGGGTCTTCACGAAAATCTGCATT 301 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 1302 TTCCACCGCGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1361 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | ||| |||||||| ||||| || || || | ||| ||||| || || | Sbjct 1362 AAAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGG 1421 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || || ||||| || | |||||||| || |||| Sbjct 1422 GAATACCTTCCTTGTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCCA 1481 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||||||||| || || || ||||| |||||||| || || ||||| Sbjct 1482 CTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCAT 1530 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || | ||||||||||| |||||||||||||| || |||| | || ||| Sbjct 548 ACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCG 607 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || || || || | ||| |||||||| || || || ||||| || |||||| Sbjct 608 AGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGGATACCTTCCTTGTCTTGA 667 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | || || || ||||| || || ||||||||||| || Sbjct 668 ATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCGACTTCAAGAGTAATGGTCTTT 727 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | ||| || || ||||| |||||| Sbjct 728 CCAGTAAGAGTCTTGACAAAAATCTGCATT 757 >seq8 Length=1068389 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| ||||||||||||||| | |||| | || || Sbjct 631590 ACGAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 631531 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| ||||| |||||||| || || || || || || || || || Sbjct 631530 AGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGG 631471 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || ||||| ||||| || ||||| || Sbjct 631470 ATCTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTG 631411 Query 134685 CCGGTTAAAGTTTTAACGA 134703 ||||| | || || |||| Sbjct 631410 CCGGTGAGGGTCTTGACGA 631392 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | || |||||||| || || || || || ||||||||||| | ||| || Sbjct 631827 AGTCGGAGAACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGA 631768 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || || || | ||||||||||| || || ||||| || Sbjct 631767 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCC 631708 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | || || || || ||||| ||||| || Sbjct 631707 TTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTG 631648 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| | || || || || || ||||| Sbjct 631647 ATAGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCAT 631610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 631326 CCACCACGGAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 631267 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || || || |||| ||||||||| || || || Sbjct 631266 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 631207 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | || || || || || || Sbjct 631206 ATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATAGTATCCGAGGACTCGACC 631147 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || ||||| || || || Sbjct 631146 TCAAGGGTGATGGTCTTTCCCGT 631124 >seq3070 Length=537 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || ||||| || || ||||| ||||||||||||||| | ||| | Sbjct 242 AGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGG 183 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || || || || ||||| || | ||||||||||| || || || ||||| Sbjct 182 TCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCC 123 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || || || | | ||| | ||||| || || || |||||||| Sbjct 122 TTGTCCTGAATCTTGGTCTTCACATTG-CTGATGCTATCGGATGACTCTACTTCGAGAGT 64 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||||| ||||| ||||| || ||||| ||| Sbjct 63 GATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCATCTTG 21 >seq19 Length=502728 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||| ||||| || ||||||||||||| Sbjct 172574 CCACCACGGAGGCGGAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 172633 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| || || ||||| || | |||||||| || || || Sbjct 172634 AGAGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 172693 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 172694 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 172753 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || || || || | || || ||||| || ||||| ||| Sbjct 172754 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTG 172804 >seq5 Length=1316942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 244/371 (66%), Gaps = 10/371 (3%) Strand=Plus/Plus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| |||| ||||| || ||||| | || | |||||||||||| ||||| || Sbjct 714395 CGCCATCCTCGAGGCTCAAACTGAGACCGGCAACCCCTTCATGCTGTACAAGGACGCATG 714454 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| ||| ||||| || | ||| |||||||||| | || ||| || ||| |||| Sbjct 714455 CAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGCTCCAACCTCTGCACTGA 714514 Query 8352 AATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTT 8411 || | ||||| | || || || || || || || || || || || || || | | Sbjct 714515 GATCATTGAGTACTGTGCCCCTGATGAGGTCGCTGTCTGTAACCTTGCCTCCCTGGCTCT 714574 Query 8412 AAACGCGTTCGTTGATCGACGCTCAAACA---CT--TACGACTTTGAACAATTGAAAAAC 8466 || |||||| ||||| ||| | || |||||||| | | || | | Sbjct 714575 ----GCCTTCGTTTGTCGAC-TACAACGAGGGCTGCTACGACTTCAAGAAGCTGCACGAA 714629 Query 8467 GCCGTGCAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTG 8526 | | || || || ||||| || | ||||| || ||||| || ||| | Sbjct 714630 GTCACCCAGGTCGTTGTCCGCAACTTGAACAAGATCATCGACGTCAACCACTACCCCGTC 714689 Query 8527 GAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTG 8586 || || ||| |||||||||||||||||| ||||||| || || || ||||| Sbjct 714690 ATTGAGGCTCGCAACAGCAACATGCGCCACAGACCCATTGGCGTTGGTGTCCAGGGTCTT 714749 Query 8587 GCCGACGCGTT 8597 ||||| || || Sbjct 714750 GCCGATGCCTT 714760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505377849237560