Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 104 2e-17
>seq1388
Length=1638
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| ||||| || || ||||| ||| | |||| |||| |||||||| ||||||
Sbjct 104 GTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTACCG 163
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| || ||||| || | || || ||||| ||||| | ||
Sbjct 164 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGAATCTTAGTCTTG 223
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | |||||| | || ||| || || ||||| || | || || || || ||
Sbjct 224 ACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGTC 283
Query 27231 TTCACAAAGATTTGCAT 27247
||||| || || |||||
Sbjct 284 TTCACGAAAATCTGCAT 300
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | |||| || | ||| | ||||| || ||||| || |||||||| |
Sbjct 758 CCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 817
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | |||| |||| || || || ||||| ||| | ||||||||||| || ||||| ||
Sbjct 818 AGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 877
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || ||||| ||||| | |||| | | || | |||||| | || ||||||
Sbjct 878 ATGCCTTCCTTATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAACT 937
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || | || || || | || || || || || |||||
Sbjct 938 TCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 984
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| ||||| || || ||||| ||| | | |||| |||| || ||||| |||||
Sbjct 332 GTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCA 391
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | |||||||| || || ||||| || | ||| || || || || || | |||
Sbjct 392 GCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGAATTTTAGTCTTC 451
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | || || | || ||| ||||| || || || | || || |||||||||
Sbjct 452 ACATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTT 511
Query 27231 TTCACAAAGATTTGCATA 27248
||||| || |||||||||
Sbjct 512 TTCACGAATATTTGCATA 529
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || |||||||||||| | |||| ||||||||||||| || ||
Sbjct 1106 GTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCA 1165
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| ||||||| || || || ||||| || | ||| || || || || ||| | ||
Sbjct 1166 GCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGAATTTTGGTCTTA 1225
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | |||||| | || |||||||| ||||| || | || || || | ||
Sbjct 1226 ACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTC 1285
Query 27231 TTCACAAAGATTTGCAT 27247
|| || || || |||||
Sbjct 1286 TTGACGAAAATCTGCAT 1302
Score = 87.8 bits (96), Expect = 2e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150
||||||||||||| || || ||| | || ||||| || || ||||| || | ||| || |
Sbjct 1374 CGTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCT 1433
Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210
| || ||||||| | || | | || | ||||| | | || ||||| ||||| |
Sbjct 1434 TGTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAA 1493
Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
||| ||||| || | ||||| |||||||| ||||||
Sbjct 1494 TAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCATA 1531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424917553077336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |