Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 250 3e-61 seq6 111 2e-19 seq16 104 3e-17 seq12 91.5 2e-13 >seq5 Length=1316942 Score = 250 bits (276), Expect = 3e-61 Identities = 1016/1580 (64%), Gaps = 37/1580 (2%) Strand=Plus/Minus Query 110524 AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTG 110583 ||| ||||| || || || ||| |||||||||| | || || | | ||| | ||| Sbjct 715283 AATCTCCCACACAGTCTTGTACAGAGACTTGATATCAGCGGGAATGTTGGGGATGTCCTG 715224 Query 110584 GATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGA-GACCA-ATC 110641 ||||||||| ||| | | || | | |||||| | | ||||| | | ||| ||| Sbjct 715223 GATGGAACCACCCTCGGCAATGATTCGGTTCTTCATGGCATCAGACCACAAGCCCATATC 715164 Query 110642 TTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTT 110701 || ||||| |||| ||| |||||||| |||||||| || ||| | Sbjct 715163 GACT--AGGTCCTTGAGGAGCCAGGGGTTGACAACCTGGAACTCACCAGCCAGGACACGG 715106 Query 110702 CTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCG 110761 | | |||| ||||||| || || || ||||||||||| || || || | ||| || | Sbjct 715105 CGCTGGTAAATGTTTGAGGTATAGGGCTCAAAGCATTCGTTGTTGCCTAGGATCTGCGAA 715046 Query 110762 GTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATG 110821 || ||| || ||||| || || | | | ||||| ||||| || | |||||||| Sbjct 715045 GTACTGGCCGTAGGCATGGGGGCGAGGAGCAAGCTGTTGCGAAGGCCATGCTCCTTGACC 714986 Query 110822 CGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAA 110879 | || |||| |||||||| | | | || || ||||| |||| ||||||||| Sbjct 714985 TGCTCACGGAGAGTCTCCCAGTCCCAAAGGTCAGAG-GGCTTCACGTTCC-ACATGTCAA 714928 Query 110880 ACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTT 110939 ||||||| | || | || |||||||| |||| |||||| |||| || || | | Sbjct 714927 ACTGAAGGATGCCCTCAGAAGCGGGAGAGCCCTTAAAGGTGGAGTAGGGGCCCTGCTCCT 714868 Query 110940 CAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 || | | ||| | || ||||| ||||| || ||||| ||||| || | Sbjct 714867 TGGCGAGCTGCACGGAG-GCAGTCAGGGCAGCGTGGTAGATGGTCTCAAATATCTGCTTG 714809 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 |||| ||| || ||| || || || | ||| | || |||| || Sbjct 714808 TTCAGCTCACGAGCCTCAGGGGACTCGAAGGGCATGCGAAGAGCGAGGAAGGCATCGGCA 714749 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| || ||||| | ||||| |||||||| ||||| || || | ||| || |||| Sbjct 714748 AGACCCTGGACACCAACGCCAATGGGTCTGTGGCGCATGTTG--CTGTTGCG-AGCCTCA 714692 Query 111119 A---CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 | |||| || || ||| |||| ||| | || | ||| | || ||| Sbjct 714691 ATGACGGGGTAGTGGTTGACGTCGATGATCTTGTTCAAGTTGCGGACAACGACCTGGGTG 714632 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 | ||| || || || | | || | || | | | |||| || || || Sbjct 714631 ACTTCGTGCAGCTTCTTGAAGTCGTAGCAGCCCTCGTTGTAGTCGACAAACGAAGGCAGA 714572 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | || || | || || ||||| |||||| | |||||| | || || Sbjct 714571 GCCAGGGAGGCAAGGTTACAGACAGCGACCTCATCAGGGGCACAGTACTCAATGATCTCA 714512 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | |||||| || || || |||| ||||| ||||| ||||| |||||| Sbjct 714511 GTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAT 714452 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || |||||||| |||||| |||| | || ||||| || || | | ||| || || | | Sbjct 714451 GCGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGGATGGCGTAC 714392 Query 111416 CA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCT--CC--GC--CTCGTACTT 111468 || ||| || | | || |||| ||| || |||| || || ||||||||| Sbjct 714391 CACAACTTCTGAGCCTTC----ATGGTCTTG---CGACCCTTGCCAAGCTTCTCGTACTT 714339 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 ||| | ||| || |||||||| || ||||| || || || || || || Sbjct 714338 CTCGTATAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCACTCGTTGGG 714279 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 || | |||| ||| | || | |||||||||||||||||| || || || ||||| Sbjct 714278 GCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAAGAGATCAGGGATCCA 714219 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 |||| | || ||||| | || ||||||| | || ||||| || | || Sbjct 714218 AAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTC 714159 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 |||||||| | || |||||||||||| ||||| || |||| |||| || ||| ||| Sbjct 714158 CAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGTCG 714099 Query 111709 ---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 ||| | || | || || || || ||| ||| || || || ||||| ||||| Sbjct 714098 CTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAAT 714039 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 | ||| | || ||| || || || ||| ||| | |||| | | | || Sbjct 714038 GACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATACGGTG 713979 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 || | || ||||| |||||| ||| ||||| |||||| | | ||||| | Sbjct 713978 AGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTC 713919 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||||||||| | ||| |||||||| || | | |||||||| |||| ||| || Sbjct 713918 ATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGG 713859 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003 || |||||||| ||||| ||||| || | || || | ||| | |||| |||| Sbjct 713858 CTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGGTAAAC--AGCTTGCTGGAC 713801 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || || ||| ||||||| |||| |||||||| || || |||||| | | || Sbjct 713800 ATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCCAGATGCCAACAGACACA 713741 Query 112064 CGCATGAACATGTACTGTGG 112083 ||||||| ||||| ||| || Sbjct 713740 CGCATGATCATGTGCTGCGG 713721 >seq6 Length=1299473 Score = 111 bits (122), Expect = 2e-19 Identities = 334/505 (66%), Gaps = 22/505 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| ||| | ||| ||||| ||||| Sbjct 1188560 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 1188619 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484 ||||| || || || ||| || | | | | || | | | || || Sbjct 1188620 AAGTCGAAGGGGTTGGTCGACTTGTAGACCTTCTCGTTGCCGAGAGCGACA------AGA 1188673 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | || |||||||||||| ||| ||||||||||| |||| ||| Sbjct 1188674 AGACGATCGGCAACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGCAGG 1188733 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 || || || || || || |||| | ||||| || || || || | | |||| Sbjct 1188734 GCGCAGGGCAGAGCCTCGGTGAGGAACTCCTTCTCGATGGTGACGGCATCAGTGATGATG 1188793 Query 122605 GCGTGGATAGT-TTC--GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 | | ||| | ||| | ||| | | || | || | || || || ||| Sbjct 1188794 TCTTCGATGATCTTCTTGCTAGCACGACCCTTCAGATGAGAGTGGAGCAGG--CA-GGCG 1188850 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| || |||||||| || ||||| || || || |||||| || || ||| Sbjct 1188851 AAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGGCCAGGC 1188910 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACC 122780 ||||| || |||||||| | ||| | || | ||| || | ||| |||||||||||| Sbjct 1188911 ATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCGCTGAAGAAGATACC 1188969 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACC 122839 ||| ||| ||||| |||| ||||| | ||| ||||| |||| | ||| | | | || Sbjct 1188970 CTCAACAGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGA-CGAGTCCTTGTCCTGGATCC 1189028 Query 122840 ATTTCATTGCCCATTTCGCCTTCTT 122864 | || ||||| | |||||||| Sbjct 1189029 ACCGGATGGCCCAGTCAGCCTTCTT 1189053 >seq16 Length=594729 Score = 104 bits (114), Expect = 3e-17 Identities = 179/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || || |||||||| | ||||| || ||||||||||| ||||| | || | || Sbjct 133972 AAAAGTTCGCGAACTCGCTTGGCTCCAACACCAACAAAGATCTCATCGAACTCGCTACCA 134031 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 || | || ||| |||||| | |||||| |||| |||||| || || || |||||| Sbjct 134032 GACATGTAGAAGAAGGGGACACCGGCTTCACCAGCGACGGCTCGTGCAAGAAGAGTCTTT 134091 Query 11804 CCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAA 11863 || || || || || |||||||| | || ||| | ||||||||| || Sbjct 134092 CCAGTTCCAGGAGGGCCAACGAGAAGGACACCCTTGGGCAGCTTGGCACCGAGGTCAGTG 134151 Query 11864 TATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCA 11923 | | ||||| | ||||||||| || |||| |||| ||| || || |||||| ||||| Sbjct 134152 AACTTTTCGGGGTTCTTGAGAAACTCAACAACTTCTTGAAGCTCCTCCTTGGCCTCGTCA 134211 Query 11924 ATCCCCTCAACATCACTGAA 11943 || | |||||| |||| Sbjct 134212 CAACCGTGGACATCATTGAA 134231 >seq12 Length=695362 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 181799 AGAAGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTT 181858 || ||| ||| |||||| || || | ||| || | |||| |||||| ||| ||| Sbjct 133915 AGCAGCATCTGAACCACCGGCAAGTCGGGAACCGAAGTTTCCACTTGGCTCTAGACAGTT 133856 Query 181859 AATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACAC 181918 ||||||||||| || | ||| | ||||| || ||| || | | ||| |||| Sbjct 133855 GATGTTGTTTGAGCCGACAAAGTTCTGAGCCAAGCCAATGATCGTCTGCTGAAGAGACAT 133796 Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCAT 181978 ||||||||||||||| || | | || | ||| || | ||||| | |||||||| | Sbjct 133795 TTCACCGTGGTGGTATGCCGTTTGCTCGGAAACGTAACCAGCCAATTCGACCACCTTCTT 133736 Query 181979 TTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAG 182038 || | | ||||| | | |||||||||||| || || || | || ||| || || Sbjct 133735 ATCCTTTACAAGGTTTCTCTTGAAGCAAGCATAGATGACCTTGCGTTGACCAGGTTTCAG 133676 Query 182039 ACCATCCGCCATATGGGCAATAGAGCGCTTGAGGTCTGCCAAACTGAA 182086 ||||| || | ||| |||||| || ||| |||| ||||| Sbjct 133675 GCCATCGAGCACGGAAGGAATTGAGCGCATGTTGTCAGCCATGCTGAA 133628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628006462648800