Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 275 7e-69 seq6 131 2e-25 seq16 86.0 7e-12 >seq5 Length=1316942 Score = 275 bits (304), Expect = 7e-69 Identities = 933/1435 (65%), Gaps = 35/1435 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| ||| | | || || || || |||||||| |||| Sbjct 713721 CCGCAGCACATGATCATGCGTGTGTCTGTTGGCATCTGGGGCGATGACATTGAGCGTGTC 713780 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 ||||||| ||| || |||||| |||| | ||| | || || | || ||||| | Sbjct 713781 CTGGAGACCTACAACCTCATGTCCAGCAAGCT--GTTTACCCATGCTTCGCCCACCCTTT 713838 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || ||||| |||| |||||||| | | || ||||||| Sbjct 713839 TCAACGCTGGTACCCCTCAGCCCCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAGGAGG 713898 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 | ||| | |||||||||| ||||| | | |||||| ||||| ||| ||||| Sbjct 713899 ATAGCATCGAGGGTATCTATGACACTCTCAAGACGTGTGCCATGATCTCCAAGATGGCTG 713958 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || | || || | | | |||| | ||| ||| || || | Sbjct 713959 GCGGTATCGGTCTCAACGCTCACCGTATCCGTGCCACTGGCTCTTACATTGCCGGTACCA 714018 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | ||| | ||||| ||||| || || || ||| ||| || || || | Sbjct 714019 ACGGTACCTCCAACGGTGTCATTCCCATGCTCCGTGTCTTCAACAACACTGCTCGATACG 714078 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | ||| ||| ||| || |||| |||| || ||||| ||||||| Sbjct 714079 TCGACCAGGGTGGCAACAAGCGACCGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACG 714138 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 ||||| || | |||||||| || |||| ||||| || | || |||| || || Sbjct 714139 CGGATGTCTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCCC 714198 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 ||||||| ||| || || ||||| || ||||||||||||||| | |||||| ||| | Sbjct 714199 GCGATCTTTTCCTAGCCCTTTGGATCCCTGATCTCTTCATGAAGCGGGTTGAGAAGAACG 714258 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 || ||||| |||| | || || || || ||||| || |||| | || |||| Sbjct 714259 GCGATTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGACTGCTACGGCGAGG 714318 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGTGCC 104874 |||| || ||| | ||| |||||||| |||| | | | | | || ||| || Sbjct 714319 AGTTCGAGGCCTTATACGAGAAGTACGA-GAAGCTTGGCAAGGGTC-GCAAGACCATGAA 714376 Query 104875 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 ||| | || | ||||| | || || ||| || ||||||| ||||| || | || | || Sbjct 714377 GGCT-CAGAAGTTGTGGTACGCCATCCTCGAGGCTCAAACTGAGACCGGCAACCCCTTCA 714435 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| ||||| ||||| || |||| ||||| || || ||||| |||| ||| | Sbjct 714436 TGCTGTACAAGGACGCATGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCA 714495 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 | ||||| ||||| || || ||| | || | | | |||||| ||||| |||| Sbjct 714496 GCTCCAACCTCTGCACTGAGATCATTGAGTACTGTGCCCCTGATGAGGTCGCTGTCTGTA 714555 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATTTGATTA 105111 |||| || || | ||||| || || ||| || | | | || | | | | || | Sbjct 714556 ACCTTGCCTCCCTGGCTCTGCCTTCGTTTGTCGA-CTACA-ACGAGGGCTGCTACGACTT 714613 Query 105112 TGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAG 105171 | || || |||||||| || | || | ||| | |||| | || || Sbjct 714614 CAAGAAGCTGCACGAAGTCACCCAGGTCGTTGTCCGCAACTTGAACAAGATCATCGACGT 714673 Query 105172 AAATTTTTACCCCG---TTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 || ||||||| ||||| ||||| || || ||| | ||| | || ||||| Sbjct 714674 CAACCACTACCCCGTCATTGAG---GCTCGCAACAGCAACATGCGCCACAGACCCATTGG 714730 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 | ||||| |||||||| || |||| ||| | | |||| | || || ||| Sbjct 714731 CGTTGGTGTCCAGGGTCTTGCCGATGCCTTCCTCGCTCTTCGCATGCCCTTCGAGTCCCC 714790 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 || || || | || || |||||||||||||| || ||||| || || || Sbjct 714791 TGAGGCTCGTGAGCTGAACAAGCAGATATTTGAGACCATCTACCACGCTGCCCTGACTGC 714850 Query 105349 --GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 105406 || | || | || ||| | || || || |||||| |||| ||||| ||| Sbjct 714851 CTCCGTGC--AGCTCGCCAAGGAGCAGGGCCCCTACTCCACCTTTAAGGGCTCTCCCGCT 714908 Query 105407 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC----AAGCTTCACTACGA 105462 || | || | ||||| ||||| |||| |||| |||| || | ||| | || Sbjct 714909 TCTGAGGGCATCCTTCAGTTTGACATGT-GGAACGTGAAGCCCTCTGACCTT---TGGGA 714964 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 |||||| ||||| || | |||||||| | || ||||| ||||| | ||| | || Sbjct 714965 CTGGGAGACTCTCCGTGAGCAGGTCAAGGAGCATGGCCTTCGCAACAGCTTGCTCCTCGC 715024 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || ||||| || ||| || | || ||| | || || || ||||||||||| ||||| Sbjct 715025 CCCCATGCCTACGGCCAGTACTTCGCAGATCCTAGGCAACAACGAATGCTTTGAGCCCTA 715084 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 || | ||||| || | | | | ||| || || ||||| | |||||||| Sbjct 715085 TACCTCAAACATTTACCAGCGCCGTGTCCTGGCTGGTGAGTTCCAGGTTGTCAAC 715139 >seq6 Length=1299473 Score = 131 bits (144), Expect = 2e-25 Identities = 160/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||||| || || | |||||| || || ||||| || |||| | | |||| | | | Sbjct 1189069 AGTTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGGTGGATCCAGGACAAGGACTC 1189010 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 || ||||||| |||| || | || ||||| ||||||||||||||||||| ||| Sbjct 1189009 GT-CCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTG 1188951 Query 94853 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 |||| ||| | || | |||||||||||||| || |||||||| || || ||||||| Sbjct 1188950 CCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCC 1188892 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| || |||||||| ||||| || ||| Sbjct 1188891 AACGAGCTGATTTCTCGTGATGAGGGCCTTCAC 1188859 >seq16 Length=594729 Score = 86.0 bits (94), Expect = 7e-12 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || || || || || |||||||| || ||||||||||| ||||| | || | || | Sbjct 133972 AAAAGTTCGCGAACTCGCTTGGCTCCAACACCAACAAAGATCTCATCGAACTC-GCTACC 134030 Query 9818 GAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 |||| | || |||||||||| | |||||| || | |||||| || ||||||||||| Sbjct 134031 AGACATGTAGAAGAAGGGGACACCGGCTTCACCAGCGACGGCTCGTGCAAGAAGAGTCTT 134090 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAA 9936 || || || || || |||| ||| |||| || | |||||| || || Sbjct 134091 TCCAGTTCCAGGAGGGCCAACGAGAAGGACACCCTTGGGCAGCTTGGCACCGAGGTCAGT 134150 Query 9937 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTC 9996 | | | || || | ||| ||||| || |||| ||||| | || || ||||| |||| Sbjct 134151 GAACTTTTCGGGGTTCTTGAGAAACTCAACAACTTCTTGAAGCTCCTCCTTGGCCTCGTC 134210 Query 9997 A 9997 | Sbjct 134211 A 134211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583237083157720