Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 291 9e-74 seq12 161 1e-34 seq6 120 3e-22 >seq5 Length=1316942 Score = 291 bits (322), Expect = 9e-74 Identities = 508/731 (69%), Gaps = 26/731 (4%) Strand=Plus/Plus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 |||||||| ||||| ||| || | ||| | ||| ||||| || || |||| || Sbjct 713774 GCGTGTCCTGGAGACCTACAACCTCATGTCCAGCAAGCTGTTTACCCATGCTTCGCCCAC 713833 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||| |||||||||||||| ||| || ||| |||| |||||||||||| | ||||| Sbjct 713834 CCTTTTCAACGCTGGTACCCCTCAGCCCCAGCTGTCTTCCTGCTTCCTGGTTGACATGAA 713893 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| || ||||| || ||||| || || |||||| ||||||| ||||||||| Sbjct 713894 GGAGGATAGCATCGAGGGTATCTATGACACTCTCAAGACGTGTGCCATGATCTCCAAGAT 713953 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAG 53470 | | || ||||||||| || || |||| | ||| |||||| | ||| | || Sbjct 713954 GGCTGGCGGTATCGGTCTCAAC-GCTC-ACCGTATCCGTGCCACTGGCTCTTACATTGCC 714011 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || ||||| | || | || || | || |||||||| |||||||||||||| || Sbjct 714012 GGTACCAACGGTACCTCCAACGGTGTCATTCCCATGCTCCGTGTCTTCAACAACACTGCT 714071 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || |||||| |||||||||| ||||| ||| | |||||||||||||||||||| Sbjct 714072 CGATACGTCGACCAGGGTGGCAACAAGCGACCGGGTGCTTTCGCCATCTACCTCGAGCCC 714131 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||| || | | ||||| || || ||||| ||| || || | |||||| | Sbjct 714132 TGGCACGCGGATGTCTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAAGGAAGAGGTC 714191 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||| || || || ||| || ||||| || || ||||||||| | ||| ||| Sbjct 714192 CGCGCCCGCGATCTTTTCCTAGCCCTTTGGATCCCTGATCTCTTCATGAAGCGGGTTGAG 714251 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTA 53769 ||| ||| || ||| ||||||||||| ||||||||||| |||| | | | || ||| Sbjct 714252 AAGAACGGCGATTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGACTG-CTA 714310 Query 53770 CGGTGAGGAGT--------TTA-ACGAGATGTATCGGACG-TACGCAGTTCAGGGCCGCT 53819 ||| ||||||| ||| |||||| ||| || | | ||| |||| ||| Sbjct 714311 CGGCGAGGAGTTCGAGGCCTTATACGAGAAGTACGAGAAGCTTGGCA----AGGGTCGC- 714365 Query 53820 ACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGA 53879 |||| | ||||| | || | ||| | || |||||| || || |||| Sbjct 714366 -----AAGACCATGAAGGCTCAGAAGTTGTGGTACGCCATCCTCGAGGCTCAAACTGAGA 714420 Query 53880 CGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACA 53939 | || | || | |||| |||||||| | |||| |||||||||||||||||| Sbjct 714421 CCGGCAACCCCTTCATGCTGTACAAGGACGCATGCAACCGCAAGAGCAACCAGAAGAACC 714480 Query 53940 TCGGCGTCATC 53950 | ||| |||| Sbjct 714481 TGGGCACCATC 714491 Score = 93.3 bits (102), Expect = 5e-14 Identities = 302/458 (66%), Gaps = 17/458 (4%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| |||||| | ||||| | || || ||||| || || || | |||||| | Sbjct 714999 GGCCTTCGCAACAGCTTGCTCCTCGCCCCCATGCCTACGGCCAGTACTTCGCAGATCCTA 715058 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||||||||||| || ||||| || || | ||||| |||| |||||| ||| || Sbjct 715059 GGCAACAACGAATGCTTTGAGCCCTATACCTCAAACATTTACCAGCGCCGTGTCCTGGCT 715118 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 |||||||| | ||||| ||| |||||||||| | || | |||| Sbjct 715119 GGTGAGTTCCAGGTTGTCAACCCCTGGCTCCTCAAGGACCTAGTCGATATGGGCTTGTGG 715178 Query 55658 AACCCGCAG--ATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG- 55712 | | | || |||| || || | ||| || || || ||| ||||| | | Sbjct 715179 T--CTGATGCCATGAAGAACCGAATCAT-TGCCGAG-GGTGGTTCCATCCAGGACATCCC 715234 Query 55713 --AGATTCCT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG- 55768 | ||||| ||| | ||||| | ||| ||| |||||||||||| | ||| Sbjct 715235 CAACATTCCCGCTGA-TATCAAGTCTCTGTACAAGACTGTGTGGGAGATTTCCCAGCGTC 715293 Query 55769 -AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA 55827 |||| || | ||| ||| || || ||||| | ||| || ||||||||||| || || Sbjct 715294 AAGTC--ATCCAGATGTCTGCCGACCGAGGTGCCTTCATTGATCAGTCCCAGTCCCTCAA 715351 Query 55828 CATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 |||| |||| || | ||| | ||| ||| | | | ||||||||| || ||||| Sbjct 715352 CATCCACATGAAGGACCCTACCATGGGTAAGATTACCAGCATGCACTTTGCTGGCTGGAA 715411 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCC 55925 | || |||||||| || |||||||| || || |||| Sbjct 715412 GCTCGGTCTCAAGACTGGCATGTACTACCTACGCACCC 715449 >seq12 Length=695362 Score = 161 bits (178), Expect = 1e-34 Identities = 223/310 (72%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| ||||||||||| ||||||||| ||| |||||||| ||||| ||||| || Sbjct 133947 GGTGAAAGGCGAGTGAAGGTGTAACGAGGGCTAGCAGCATCTGAACCACCGGCAAGTCGG 133888 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 | |||||| | |||||| ||||| | ||| | |||||| | ||| |||||||| ||| Sbjct 133887 GAACCGAAGTTTCCACTTGGCTCTAGACAGTTGATGTTGTTTGAGCCGACAAAGTTCTGA 133828 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 |||||| | ||||| || || | ||||| ||||| || ||||| ||||| Sbjct 133827 GCCAAGCCAATGATCGTCTGCTGAAGAGACATTTCACCGTGGTGGTATGCCGTTTGCTCG 133768 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGC 117530 | ||||| || |||| | |||||||| | || | || ||||| |||||| || Sbjct 133767 GAAACGTAACCAGCCAATTCGACCACCTTCTTATCCTTTAC--AAGGTTTCTCTTGAAGC 133710 Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAAC 117590 | ||||| || |||||||| |||| || ||||| ||||| |||| ||| || || | Sbjct 133709 AAGCATAGATGACCTTGCGTTGACCAGGTTTCAGGCCATCGAGCACGGAAGGAATTGAGC 133650 Query 117591 GCTTGATGTC 117600 || || |||| Sbjct 133649 GCATGTTGTC 133640 Score = 129 bits (142), Expect = 6e-25 Identities = 208/299 (70%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| |||| || | ||| || ||||| ||||| || || || | || || Sbjct 133938 CGAGTGAAGGTGTAACGAGGGCTAGCAGCATCTGAACCACCGGCAAGTCGGGAACCGAAG 133879 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||||| || ||||| |||||| | ||| || || ||||||||||| Sbjct 133878 TTTCCACTTGGCTCTAGACAGTTGATGTTGTTTGAGCCGACAAAGTTCTGAGCCAAGCCA 133819 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | ||||| ||| ||| | |||||||||||| || ||||| ||||| | | ||| Sbjct 133818 ATGATCGTCTGCTGAAGAGACATTTCACCGTGGTGGTATGCCGTTTGCTCGGAAACGTAA 133759 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | |||||||| | ||| | ||||| |||||| || || || || Sbjct 133758 CCAGCCAATTCGACCACCTTCTTATCCTTTACAAGGTTTCTCTTGAAGCAAGCATAGATG 133699 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 |||||||| || ||||||| || || | |||| |||||| || ||| || |||| Sbjct 133698 ACCTTGCGTTGACCAGGTTTCAGGCCATCGAGCACGGAAGGAATTGAGCGCATGTTGTC 133640 >seq6 Length=1299473 Score = 120 bits (132), Expect = 3e-22 Identities = 308/456 (68%), Gaps = 20/456 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 1188560 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 1188619 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAG 74578 ||||||| ||||| | | ||| | |||||| || | | | | || || Sbjct 1188620 AAGTCGAAGGGGTTGGTCGACTTGTAGAC---CTTCTCGTTGCCGAGA--GCGACAAGAA 1188674 Query 74579 G-CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637 | ||||| || || || | |||||||||| |||| | | | |||||||| || Sbjct 1188675 GACGATCGGCAACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGCAGGG 1188734 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAATC 74696 ||| ||||| |||||||||| ||||| |||| | | || || || | || Sbjct 1188735 CGCAGGGCAGAGCCTCGGTGAGGAACTCCTTCTCGATGGTGACGGCATCAGTG-ATGATG 1188793 Query 74697 TTGTGAATG-TCTT--TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 | | ||| |||| || || ||| || |||| ||||||| ||| | || ||| Sbjct 1188794 TCTTCGATGATCTTCTTGCTAG--CACGAC-CCTTCAGATGAGAGTGGAGCAGGCA-GGC 1188849 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 || || || ||| ||||| | |||| || || || || | |||||||| Sbjct 1188850 GAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGGCCAGG 1188909 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || ||||||||||| | ||| ||||||| | |||| ||| ||||||||||| || Sbjct 1188910 CATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACC 1188969 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 || ||| |||||||| || ||||| || || || Sbjct 1188970 CTCAACAGCAGCAAAGGCAACCAGGCGCTGGGCAAA 1189005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547193748829400