Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 116 2e-21
seq19 98.7 6e-16
>seq1388
Length=1638
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||||| ||| | ||| ||||| |||||||| ||||| || || ||
Sbjct 758 CCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 817
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| |||||||| ||||| || || || | |||||| |||||||| ||
Sbjct 818 AGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 877
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658
| || ||||| || ||||| || || ||| | || ||||| | ||| ||
Sbjct 878 ATGCCTTCCTTATCCTGAATCTTA-GTCTTCACGTTCTCGATAGTGTCGGAGGACTCAAC 936
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| | || || || || |||||||| || || || |||||||||||
Sbjct 937 TTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 984
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||| | || || ||| |||||| || || || || || ||||| || ||
Sbjct 1085 AGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGA 1144
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || || || || || || | || || |||||||| || | || |||
Sbjct 1145 CCGTCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCC 1204
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| ||| || |||||| | || ||||| | ||| ||||| | ||
Sbjct 1205 TTGTCC-TGAATTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGT 1263
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || |||||||| || || || |||||||||||
Sbjct 1264 GATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 1302
Score = 91.5 bits (100), Expect = 9e-14
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||| | || ||||| ||| || || ||||| ||||| ||||| || ||
Sbjct 83 AGACGAAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGA 142
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || |||||||| || || | |||||| |||||||| || | || |||
Sbjct 143 CCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCC 202
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || ||||| || || ||| | ||| ||||| | ||||| || | ||
Sbjct 203 TTATCCTGAATCTTA-GTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGT 261
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || ||||| |||||||||||
Sbjct 262 AATGGTCTTTCCAGTAAGGGTCTTCACGAAAATCTGCAT 300
>seq19
Length=502728
Score = 98.7 bits (108), Expect = 6e-16
Identities = 157/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| ||||||||||||||||| || ||||| || || || || ||
Sbjct 172583 AGGCGGAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGG 172642
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || ||||| ||||| || | ||||| |||||||| || | ||||||
Sbjct 172643 CCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCC 172702
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | || ||||| |||||| || | |||
Sbjct 172703 TTGTCCTGGATC-TTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 172761
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||||| || || || | || || || || |||||||| |||
Sbjct 172762 GATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTG 172804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314717122249949
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |