Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 134 1e-26
seq3070 102 7e-17
seq8 89.7 4e-13
>seq1388
Length=1638
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || || ||| | ||||||||||| |||||| | |||
Sbjct 300 ATGCAGATTTTCGTGAAGACCCTTACTGGAAAGACCATTACTCTTGAGGTGGAATCCTCC 241
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| ||||| || ||||| || || |||||||| || || || ||
Sbjct 240 GACACTATTGAGAACGTCAAGACTAAGATTCAGGATAAGGAAGGCATCCCCCCGGACCAG 181
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||| || || | || ||| || || ||||||||||||||
Sbjct 180 CAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAAC 121
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || || ||||| || | || | || | ||| |||| |||||
Sbjct 120 ATCCAGAAAGAGTCTACTCTTCACCTTGTGCTTCGTCTGCGTGGTGG 74
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||| || || ||| | |||||||||||||| ||| | ||
Sbjct 756 ATGCAGATTTTTGTCAAGACTCTTACTGGAAAGACCATTACTCTTGAAGTCGAATCCTCT 697
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| || || || ||||||||||| ||||| || || || |||||
Sbjct 696 GATACCATCGAGAACGTGAAGACTAAGATTCAAGACAAGGAAGGTATCCCCCCGGATCAG 637
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||| | || | ||| || || ||| | || || | ||| |||| || ||||||
Sbjct 636 CAACGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACCCTTTCTGACTACAAC 577
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||| || || || ||| | || | || ||||| ||||| ||
Sbjct 576 ATTCAGAAGGAATCCACTTTGCATCTCGTACTTCGCTTGCGTGGTGGTAT 527
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| ||||| || ||||||||||| || ||| | || || |||||||||||| | ||
Sbjct 528 ATGCAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCG 469
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || || |||||||| ||||| ||||| || || || || ||
Sbjct 468 GATACCATTGAGAATGTGAAGACTAAAATTCAGGACAAGGAAGGTATTCCTCCGGACCAG 409
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||| | || | ||| || || || | || ||| || ||| | ||||||||||||
Sbjct 408 CAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCCGATTACAAC 349
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || || ||||| || | ||| | || | ||| | || ||||| ||
Sbjct 348 ATCCAGAAAGAGTCTACTCTTCATCTTGTGCTCCGTCTACGTGGTGGAAT 299
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || | ||||| ||| | || ||||||||||| || | |||
Sbjct 984 ATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTCC 925
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || || || ||||| || || |||||||| || || || ||
Sbjct 924 GACACTATCGAGAACGTGAAGACTAAGATTCAGGATAAGGAAGGCATCCCCCCGGACCAG 865
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| || || ||| | || ||| || ||| | || || ||||||
Sbjct 864 CAGCGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGTCGCACCCTGTCTGACTACAAC 805
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| |||||||| || || | ||| | || ||||| | || || || ||
Sbjct 804 ATCCAAAAGGAATCTACTCTTCATCTCGTGCTGCGTCTTCGCGGCGGAAT 755
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || | ||||| ||| | || ||||||||||| || | |||
Sbjct 1302 ATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTCC 1243
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || || |||||||| ||||| ||||| || || || || ||
Sbjct 1242 GACACTATCGAGAACGTTAAGACCAAAATTCAGGACAAGGAAGGTATTCCCCCGGACCAG 1183
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || | || | ||| ||||| || | |||||| || || ||||||| |||||
Sbjct 1182 CAACGACTCATTTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCCGACTACAAT 1123
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| | || | || | ||| | || ||||| ||
Sbjct 1122 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTCCGTCTCCGCGGTGGAAT 1073
>seq3070
Length=537
Score = 102 bits (112), Expect = 7e-17
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || ||||| ||| |||| ||||| ||||| || | |||
Sbjct 25 ATGCAGATCTTCGTCAAAACGCTAACCGGAAAGACTATCACTCTCGAAGTAGAGTCATCC 84
Query 27048 GACTCGATTGAG-ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | | | || | || || || ||||| ||||| ||||| || || || |||||
Sbjct 85 GA-TAGCATCAGCAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATTCCTCCGGATCA 143
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACA 27165
||||| | || | || || || ||| |||| || | || || | ||||| ||||
Sbjct 144 GCAGCGCCTCATCTTTGCGGGAAAGCAACTGGAGGAT-GACCGCACTCTGTCCGACTACA 202
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||||| |||||||| || ||||| | || | ||| | || |||||
Sbjct 203 ACATTCAGAAGGAGTCTACTCTACATCTTGTGCTCCGTCTTCGTGGTGG 251
>seq8
Length=1068389
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || |||||||| ||| | || |||||||| || || | |
Sbjct 631838 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCCAGC 631897
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || ||||| ||||| || ||||| || ||||| ||
Sbjct 631898 GATACCATCGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 631957
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | || || || || |||| || || ||| | ||||||||||
Sbjct 631958 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGCGATTACAAC 632017
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || |||||||| ||| | || |||| | ||| | || || ||
Sbjct 632018 ATCCAGAAGGAGTCTACCCTTCACCTGGTCCTCCGTCTTCGTGGCGG 632064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434900715130560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |