Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1388 127 1e-24 seq3070 111 1e-19 seq8 98.7 7e-16 seq19 82.4 5e-11 >seq1388 Length=1638 Score = 127 bits (140), Expect = 1e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||| | || ||||| || |||||||| |||||||| ||| | Sbjct 1303 AATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTC 1244 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || || |||| || |||||| ||||| |||||| | || || || | Sbjct 1243 CGACACTATCGAGAACGTTAAGAC-CAAAATTCAGGACAAGGAAGGTATTCCCCCGGACC 1185 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || || | || || || ||||| || || ||||||| |||||| | ||| |||| Sbjct 1184 AGCAACGACTCATTTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCCGACTACA 1125 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || |||||||| Sbjct 1124 ATATCCAGAAGGAGTCCAC 1106 Score = 118 bits (130), Expect = 7e-22 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||| || ||||| || || ||||| || || || ||| | Sbjct 301 AATGCAGATTTTCGTGAAGACCCTTACTGGAAAGACCATTACTCTTGAGGTGGAATCCTC 242 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| || | || || || | || || || ||||| | || || || | Sbjct 241 CGACACTATTGAGAACGTCAAGACTAAGA-TTCAGGATAAGGAAGGCATCCCCCCGGACC 183 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || || ||||| || || || || |||| |||||| | |||||||| Sbjct 182 AGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACA 123 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 122 ACATCCAGAAAGAGTCTAC 104 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| || || || || |||||||| || ||||| || ||| || Sbjct 528 ATGCAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCG 469 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || || |||| || ||||| |||||| | || || || || Sbjct 468 GATACCATTGAGAATGTGAAGACTAAAA-TTCAGGACAAGGAAGGTATTCCTCCGGACCA 410 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || || || || || || |||| ||||| | ||||||||| Sbjct 409 GCAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCCGATTACAA 350 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 349 CATCCAGAAAGAGTCTAC 332 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||| | || ||||| || |||||||| |||||||| ||| | Sbjct 985 AATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTC 926 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || || | || || || ||| || || ||||| | || || || | Sbjct 925 CGACACTATCGAGAACGTGAAGAC-TAAGATTCAGGATAAGGAAGGCATCCCCCCGGACC 867 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || || || || || ||||| || |||| ||||| | || |||| Sbjct 866 AGCAGCGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGTCGCACCCTGTCTGACTACA 807 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| || || || Sbjct 806 ACATCCAAAAGGAATCTAC 788 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||||||| | || || || || || ||||||||||| || || | Sbjct 1530 ATGCAGATCTTTGTTAAAACCTTAACAGGCAAGACTATTACTCTCGAAGTGGAGTCTTCC 1471 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || || ||||| |||||| | || || || || Sbjct 1470 GACACCATCGAGAATGTCAAGAC-CAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCA 1412 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || ||||| || || ||||||| || ||| | || ||||| Sbjct 1411 GCAACGTCTTATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCTGACTACAA 1352 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1351 CATCCAGAAGGAGTCCAC 1334 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || || || ||||| || || ||||| ||||| || ||| | Sbjct 757 AATGCAGATTTTTGTCAAGACTCTTACTGGAAAGACCATTACTCTTGAAGTCGAATCCTC 698 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || || | || || || ||| ||||| |||||| | || || |||| Sbjct 697 TGATACCATCGAGAACGTGAAGAC-TAAGATTCAAGACAAGGAAGGTATCCCCCCGGATC 639 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| | || || || || || ||||| || || | ||||| | || |||| Sbjct 638 AGCAACGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACCCTTTCTGACTACA 579 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || || || ||||| || ||| | || | | ||||| || || Sbjct 578 ACATTCAGAAGGAATCCACTTTGCATCTCGTACTTCGCTTGCGTGGTGG 530 >seq3070 Length=537 Score = 111 bits (122), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| ||||| || || ||||| || |||||||||||||| || || Sbjct 22 AAGATGCAGATCTTCGTCAAAACGCTAACCGGAAAGACTATCACTCTCGAAGTAGAGTCA 81 Query 23668 ACGGACA-CTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || | | | ||| | || || || ||| ||||| ||||| | || || || Sbjct 82 TCCGATAGCATCAGCAATGTGAAGAC-CAAGATTCAGGACAAGGAAGGAATTCCTCCGGA 140 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||||| | || ||||| || || |||||||| || || |||||| | ||| || Sbjct 141 TCAGCAGCGCCTCATCTTTGCGGGAAAGCAACTGGAGGATGACCGCACTCTGTCCGACTA 200 Query 23787 CAACATACAAAAAGAGTCCACATTACAT 23814 |||||| || || ||||| || ||||| Sbjct 201 CAACATTCAGAAGGAGTCTACTCTACAT 228 >seq8 Length=1068389 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || ||||| ||||||||||| || || || |||| Sbjct 631838 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCCAGC 631897 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || ||| ||||| || || | || || || || Sbjct 631898 GATACCATCGACAATGTGAAGTC-GAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 631956 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || ||||| || | ||||| | |||||||||| Sbjct 631957 GCAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGCGATTACAA 632016 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 632017 CATCCAGAAGGAGTCTAC 632034 >seq19 Length=502728 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||||||||| || |||||||| || || || || || Sbjct 172803 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 172744 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || || Sbjct 172743 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 172684 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||| || || || || || || | |||||| | |||| ||| Sbjct 172683 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTAC 172624 Query 23788 AACATACAAAAAGAG 23802 ||||| || || ||| Sbjct 172623 AACATCCAGAAGGAG 172609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337996199292524