Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 127 1e-24
seq3070 111 1e-19
seq8 98.7 7e-16
seq19 82.4 5e-11
>seq1388
Length=1638
Score = 127 bits (140), Expect = 1e-24
Identities = 149/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || ||| | || ||||| || |||||||| |||||||| ||| |
Sbjct 1303 AATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTC 1244
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| | || || |||| || |||||| ||||| |||||| | || || || |
Sbjct 1243 CGACACTATCGAGAACGTTAAGAC-CAAAATTCAGGACAAGGAAGGTATTCCCCCGGACC 1185
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || || | || || || ||||| || || ||||||| |||||| | ||| ||||
Sbjct 1184 AGCAACGACTCATTTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCCGACTACA 1125
Query 23789 ACATACAAAAAGAGTCCAC 23807
| || || || ||||||||
Sbjct 1124 ATATCCAGAAGGAGTCCAC 1106
Score = 118 bits (130), Expect = 7e-22
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || ||||| || ||||| || || ||||| || || || ||| |
Sbjct 301 AATGCAGATTTTCGTGAAGACCCTTACTGGAAAGACCATTACTCTTGAGGTGGAATCCTC 242
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| |||| || | || || || | || || || ||||| | || || || |
Sbjct 241 CGACACTATTGAGAACGTCAAGACTAAGA-TTCAGGATAAGGAAGGCATCCCCCCGGACC 183
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| |||||| | || || ||||| || || || || |||| |||||| | ||||||||
Sbjct 182 AGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACA 123
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || |||||||| ||
Sbjct 122 ACATCCAGAAAGAGTCTAC 104
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| ||||| || || || || |||||||| || ||||| || ||| ||
Sbjct 528 ATGCAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCG 469
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || || |||| || ||||| |||||| | || || || ||
Sbjct 468 GATACCATTGAGAATGTGAAGACTAAAA-TTCAGGACAAGGAAGGTATTCCTCCGGACCA 410
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| ||| | || || || || || || || || |||| ||||| | |||||||||
Sbjct 409 GCAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCCGATTACAA 350
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 349 CATCCAGAAAGAGTCTAC 332
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || ||| | || ||||| || |||||||| |||||||| ||| |
Sbjct 985 AATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTC 926
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| | || || | || || || ||| || || ||||| | || || || |
Sbjct 925 CGACACTATCGAGAACGTGAAGAC-TAAGATTCAGGATAAGGAAGGCATCCCCCCGGACC 867
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| |||||| | || || || || || ||||| || |||| ||||| | || ||||
Sbjct 866 AGCAGCGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGTCGCACCCTGTCTGACTACA 807
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| ||||| || || ||
Sbjct 806 ACATCCAAAAGGAATCTAC 788
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || ||||||||| | || || || || || ||||||||||| || || |
Sbjct 1530 ATGCAGATCTTTGTTAAAACCTTAACAGGCAAGACTATTACTCTCGAAGTGGAGTCTTCC 1471
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || || || || ||||| |||||| | || || || ||
Sbjct 1470 GACACCATCGAGAATGTCAAGAC-CAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCA 1412
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| ||| | || || || ||||| || || ||||||| || ||| | || |||||
Sbjct 1411 GCAACGTCTTATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCTGACTACAA 1352
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 1351 CATCCAGAAGGAGTCCAC 1334
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||||||||| || || || || || ||||| || || ||||| ||||| || ||| |
Sbjct 757 AATGCAGATTTTTGTCAAGACTCTTACTGGAAAGACCATTACTCTTGAAGTCGAATCCTC 698
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || | || || | || || || ||| ||||| |||||| | || || ||||
Sbjct 697 TGATACCATCGAGAACGTGAAGAC-TAAGATTCAAGACAAGGAAGGTATCCCCCCGGATC 639
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || ||| | || || || || || ||||| || || | ||||| | || ||||
Sbjct 638 AGCAACGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACCCTTTCTGACTACA 579
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|||| || || || ||||| || ||| | || | | ||||| || ||
Sbjct 578 ACATTCAGAAGGAATCCACTTTGCATCTCGTACTTCGCTTGCGTGGTGG 530
>seq3070
Length=537
Score = 111 bits (122), Expect = 1e-19
Identities = 151/208 (73%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 22 AAGATGCAGATCTTCGTCAAAACGCTAACCGGAAAGACTATCACTCTCGAAGTAGAGTCA 81
Query 23668 ACGGACA-CTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| || | | | ||| | || || || ||| ||||| ||||| | || || ||
Sbjct 82 TCCGATAGCATCAGCAATGTGAAGAC-CAAGATTCAGGACAAGGAAGGAATTCCTCCGGA 140
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| ||||| | || ||||| || || |||||||| || || |||||| | ||| ||
Sbjct 141 TCAGCAGCGCCTCATCTTTGCGGGAAAGCAACTGGAGGATGACCGCACTCTGTCCGACTA 200
Query 23787 CAACATACAAAAAGAGTCCACATTACAT 23814
|||||| || || ||||| || |||||
Sbjct 201 CAACATTCAGAAGGAGTCTACTCTACAT 228
>seq8
Length=1068389
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || ||||| ||||||||||| || || || ||||
Sbjct 631838 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCCAGC 631897
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || ||| ||||| || || | || || || ||
Sbjct 631898 GATACCATCGACAATGTGAAGTC-GAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 631956
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||| || || || ||||| || | ||||| | ||||||||||
Sbjct 631957 GCAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGCGATTACAA 632016
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 632017 CATCCAGAAGGAGTCTAC 632034
>seq19
Length=502728
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| || ||||||||||| || |||||||| || || || || ||
Sbjct 172803 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 172744
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | || | | || || || ||||| || || | || || ||
Sbjct 172743 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 172684
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||||| | || ||||| || || || || || || | |||||| | |||| |||
Sbjct 172683 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTAC 172624
Query 23788 AACATACAAAAAGAG 23802
||||| || || |||
Sbjct 172623 AACATCCAGAAGGAG 172609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337996199292524
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |