Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 183 7e-41
seq19 154 4e-32
seq8 154 4e-32
seq15 145 2e-29
seq3070 123 6e-23
>seq1388
Length=1638
Score = 183 bits (202), Expect = 7e-41
Identities = 164/206 (80%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || ||||| || || || || ||||||||| ||| |||
Sbjct 297 CAGATTTTCGTGAAGACCCTTACTGGAAAGACCATTACTCTTGAGGTGGAATCCTCCGAC 238
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||||||||| ||||||||||| || ||||| ||||| |||||||||||
Sbjct 237 ACTATTGAGAACGTCAAGACTAAGATTCAGGATAAGGAAGGCATCCCCCCGGACCAGCAG 178
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || |||||||| || || | |||||| ||||||| ||| ||
Sbjct 177 CGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAACATC 118
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||| || || || || |||||
Sbjct 117 CAGAAAGAGTCTACTCTTCACCTTGT 92
Score = 181 bits (200), Expect = 3e-40
Identities = 166/207 (80%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||||||||| || || || ||||||||||| || |||||| ||| ||
Sbjct 525 CAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCGGAT 466
Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
||||| ||||| || || || ||| ||||||||||| ||||| || ||||||||||||||
Sbjct 465 ACCATTGAGAATGTGAAGACTAAA-ATTCAGGACAAGGAAGGTATTCCTCCGGACCAGCA 407
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102
||| || |||||||| || || ||||| || || || | || || ||||||| ||| |
Sbjct 406 ACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCCGATTACAACAT 347
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
||| ||||| || || || ||||||||
Sbjct 346 CCAGAAAGAGTCTACTCTTCATCTTGT 320
Score = 159 bits (176), Expect = 8e-34
Identities = 161/207 (78%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || | || ||||| || ||||| || || || || ||| |||
Sbjct 1299 CAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTCCGAC 1240
Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|| ||||||||||| || || ||| ||||||||||| ||||| || || |||||||||||
Sbjct 1239 ACTATCGAGAACGTTAAGACCAAA-ATTCAGGACAAGGAAGGTATTCCCCCGGACCAGCA 1181
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102
|||||| || ||||| || || ||||||||||| || | |||||| |||| || || |
Sbjct 1180 ACGACTCATTTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCCGACTACAATAT 1121
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
||| || || || || ||||| |||||
Sbjct 1120 CCAGAAGGAGTCCACCCTGCACCTTGT 1094
Score = 159 bits (176), Expect = 8e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || ||||| | ||||| || || || || ||||| ||||| || |||
Sbjct 1527 CAGATCTTTGTTAAAACCTTAACAGGCAAGACTATTACTCTCGAAGTGGAGTCTTCCGAC 1468
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| ||||| ||||| |||||||| ||||| || || ||||||||||||
Sbjct 1467 ACCATCGAGAATGTCAAGACCAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCAGCAA 1408
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || || ||||||||||| || | |||||| | || || ||| ||
Sbjct 1407 CGTCTTATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCTGACTACAACATC 1348
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || ||||| |||||
Sbjct 1347 CAGAAGGAGTCCACCCTGCACCTTGT 1322
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || ||||| || ||||| || || || || || || ||| ||| ||
Sbjct 753 CAGATTTTTGTCAAGACTCTTACTGGAAAGACCATTACTCTTGAAGTCGAATCCTCTGAT 694
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| || |||||||| ||||| ||||| ||||| ||||| ||||||
Sbjct 693 ACCATCGAGAACGTGAAGACTAAGATTCAAGACAAGGAAGGTATCCCCCCGGATCAGCAA 634
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| ||||| || ||||| ||||| | || ||| | || || ||| |
Sbjct 633 CGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACCCTTTCTGACTACAACATT 574
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || ||||||| ||
Sbjct 573 CAGAAGGAATCCACTTTGCATCTCGT 548
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || | || ||||| || ||||| || || || || ||| |||
Sbjct 981 CAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTCCGAC 922
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||||||||| || ||||| ||||| |||||||||||
Sbjct 921 ACTATCGAGAACGTGAAGACTAAGATTCAGGATAAGGAAGGCATCCCCCCGGACCAGCAG 862
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || || || || || || | || || | || || ||| ||
Sbjct 861 CGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGTCGCACCCTGTCTGACTACAACATC 802
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||| ||||| || || ||||| ||
Sbjct 801 CAAAAGGAATCTACTCTTCATCTCGT 776
>seq19
Length=502728
Score = 154 bits (170), Expect = 4e-32
Identities = 147/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 172797 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 172738
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| |||||||||||
Sbjct 172737 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 172678
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||| || || || |||||||| ||||| | ||||| ||| || ||| ||
Sbjct 172677 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATC 172618
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 172617 CAGAAGGA 172610
>seq8
Length=1068389
Score = 154 bits (170), Expect = 4e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || ||||| || || || ||||||||||||||||| || ||
Sbjct 631613 CAGATCTTTGTCAAGACCCTCACCGGTAAGACTATCACCCTCGAGGTGGAGTCATCTGAT 631672
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || || || ||||| |||||
Sbjct 631673 ACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAGCAG 631732
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| |||||||||||||| ||||| || ||||| | || || | || || ||| ||
Sbjct 631733 CGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGAACCCTGTCTGACTACAACATC 631792
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| ||||| || || || || || ||| | ||||
Sbjct 631793 CAGAAAGAGTCTACTCTACACCTGGTTCTCCGACT 631827
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || ||||| |||||||| || ||||| || | ||
Sbjct 631841 CAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCCAGCGAT 631900
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || |||||||||||||| || || || || || ||||||||
Sbjct 631901 ACCATCGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 631960
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||| || || || ||||| || ||||| | || || |||||| ||| ||
Sbjct 631961 CGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGCGATTACAACATC 632020
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 632021 CAGAAGGAGTCTACCCTTCACCTGGT 632046
Score = 127 bits (140), Expect = 5e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| ||||| || |||||||| ||||| || ||| || || ||||| ||||| ||
Sbjct 631124 ACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCGGATACTATCGACAACGTGAAGTCG 631183
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| ||||| || || || ||||| ||||||||||| || || |||||||| |||||
Sbjct 631184 AAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGAAAG 631243
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | || || |||| || ||| |||| || || || || || ||
Sbjct 631244 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 631303
Query 178125 CTTGT 178129
|||||
Sbjct 631304 CTTGT 631308
Score = 116 bits (128), Expect = 9e-21
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || ||||||||||||||||| || ||||| ||||
Sbjct 631392 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGACACTATCG 631451
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| ||||| ||||| || || || || || ||||||||||| || | |
Sbjct 631452 ACAATGTCAAGTCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGCTTGA 631511
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || || || ||||| || ||||| | || || |||| || ||| | || || |
Sbjct 631512 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGG 631571
Query 178111 AATCAACACTGCATCTTGT 178129
| || || || || || ||
Sbjct 631572 AGTCTACCCTCCACCTCGT 631590
>seq15
Length=666898
Score = 145 bits (160), Expect = 2e-29
Identities = 140/180 (78%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || ||||| || || || |||||||| ||||| || ||| ||||||||
Sbjct 143385 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCAT 143444
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
|| || ||||| ||||| |||||||| || || ||||| ||||||||||| |||||
Sbjct 143445 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACT 143504
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || ||||| || ||||| | ||||| |||| || ||| |||| ||
Sbjct 143505 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 143564
>seq3070
Length=537
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| || || ||||| || ||||| ||||| || || || ||
Sbjct 28 CAGATCTTCGTCAAAACGCTAACCGGAAAGACTATCACTCTCGAAGTAGAGTCATCCGAT 87
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| |||| || || || |||||||||||||| |||||||| |||||||| |||||
Sbjct 88 AGCATCAGCAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATTCCTCCGGATCAGCAG 147
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || ||||| || || || |||| | ||||| |||| || ||| |
Sbjct 148 CGCCTCATCTTTGCGGGAAAGCAACTGGAGGATGACCGCACTCTGTCCGACTACAACATT 207
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||||||
Sbjct 208 CAGAAGGAGTCTACTCTACATCTTGT 233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203681029612082
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |