Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9 131 4e-25 seq26 109 1e-18 seq25 93.3 9e-14 >seq9 Length=477563 Score = 131 bits (144), Expect = 4e-25 Identities = 182/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 230385 AATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCG 230444 |||||| || || || || | | || |||||||||| || ||| | || || Sbjct 51642 AATCATCACCGATGCCGTGGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGC 51583 Query 230445 CCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 ||| | ||||||||||| || ||| ||||||||||| ||||| ||||||||| | Sbjct 51582 CCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 51523 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | || || || || |||| || || ||||| | | |||||||| | || ||||| Sbjct 51522 GCTGGTGGCTCTCGGCAACGACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGA 51463 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 | ||| ||||| || |||||||||||||| || |||||||| | ||||| |||| Sbjct 51462 GAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTACCAGAA 51403 Query 230625 GCCTGGTGTGATGAA 230639 | ||||||| ||||| Sbjct 51402 GGCTGGTGTCATGAA 51388 >seq26 Length=2648925 Score = 109 bits (120), Expect = 1e-18 Identities = 391/601 (65%), Gaps = 24/601 (4%) Strand=Plus/Plus Query 319013 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 319072 ||||||| ||||| |||| ||| ||| |||| ||||| | ||||||||| ||||| Sbjct 449482 AACGCCACTGGATGTACTCCGAGGGAGTCTTGTCCAGATGGTTATCGATGTGGGCGAAAG 449541 Query 319073 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATGGTGG 319132 | ||||| | |||||||| ||| || || |||| ||| |||| ||||| Sbjct 449542 CGTGCTGCTTGATGTAAGCAATACGGATGTTCTCGTGCTGGTAAATCTCACCGGCGGTGG 449601 Query 319133 CTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCGCCCA 319192 ||| | ||| || ||||| || ||||| || || || || ||||| ||| | Sbjct 449602 GGACCAGCTCTCCGGTCAGCACGTTGATGAGCGTCGACTTTCCGGCTCCGTTGGGGCCAA 449661 Query 319193 CCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTT 319252 ||| | || | ||| | || || |||| | | | | ||| | || Sbjct 449662 TAACAGCAATACGCGAGCTGAGAGAGCACTGGAAGGTGATATCGGCAATCTGGGGCTTGG 449721 Query 319253 CCGTACCCGGATACTTGAACCCCACACCGCGTAGCTT-CATGATGGCACGGTCCTTCGAA 319311 || || || |||| ||| | || | ||||| || ||||| | |||| | Sbjct 449722 AGGTGCCAGGGTACTGGAAGCTCAT-CTTAGTAGCACGCAGAATGGCCTTGGCCTTGGTC 449780 Query 319312 GTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGG 319371 ||| |||||||||||| |||||||||||||| | || ||| || | ||| Sbjct 449781 TTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCAATCTCCGAGGCACCAAGC 449840 Query 319372 GCGTAGTAA---CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 319428 |||||||| | || || ||| | ||| |||||||||| ||| || |||||| Sbjct 449841 TCGTAGTAAGACTTGGCCGA---GGGGCACTTGCGCACGAACTCGCGCAGGTTACCCTTG 449897 Query 319429 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT-GCAAACAGCGTCGAG 319487 || ||| ||||| | | | ||||| ||||| || | | | ||| || |||||| Sbjct 449898 TAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGATGAT-GTGCTGGCACACGTTGTCGAG 449953 Query 319488 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG----GTTGATCAGGT 319543 ||| || |||||||| ||||| || | |||| || | ||| ||| ||||||| Sbjct 449954 GAAGCCAGAGTCGTGGGACACGAT---GATCGAA--GTGC--AAGGAGAGTTCATCAGGT 450006 Query 319544 ATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCA 319603 | || | |||| | ||||| |||| | ||||||||| |||||||| || |||| Sbjct 450007 AGTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAGCAGCA 450066 Query 319604 G 319604 | Sbjct 450067 G 450067 >seq25 Length=4183617 Score = 93.3 bits (102), Expect = 9e-14 Identities = 197/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 319374 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 319433 |||||| ||| | ||||| ||| ||| ||||| ||| ||| || || |||| Sbjct 21751 GTAGTAGCTCTTGGCCTCGGGCCGCACCTTGACGAAGGCGGCCAGGTTGCCGCGGTACAC 21692 Query 319434 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 319493 ||||| ||| || ||||| ||| || |||| || ||||||||||| || Sbjct 21691 GGCTAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGGCGTCGAGGAAGCC 21632 Query 319494 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAA 319553 ||||||||| ||||| |||| | | | ||| || || ||||||| | || Sbjct 21631 GGAGTCGTGGGACACGATCAGACTGGTGATATCCGGGTGGCTGGTCAGGTAGCCCTCCAG 21572 Query 319554 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGC 319613 |||| | ||||| | || | |||||||| || ||||| || ||||| | | || Sbjct 21571 CCACTTAACGTTGGCGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGCAGCACGTCGGC 21512 Query 319614 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 || | ||||| || || || || ||||| ||||| ||||| || ||||| || Sbjct 21511 CTTTTGCAGCATGGCGCGGGCCAGGGCGAGCTTCATCTTCCATCCACCGGACAG 21458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823606952270