Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq9 131 4e-25
seq26 109 1e-18
seq25 93.3 9e-14
>seq9
Length=477563
Score = 131 bits (144), Expect = 4e-25
Identities = 182/255 (71%), Gaps = 0/255 (0%)
Strand=Plus/Minus
Query 230385 AATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCG 230444
|||||| || || || || | | || |||||||||| || ||| | || ||
Sbjct 51642 AATCATCACCGATGCCGTGGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGC 51583
Query 230445 CCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504
||| | ||||||||||| || ||| ||||||||||| ||||| ||||||||| |
Sbjct 51582 CCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 51523
Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564
| || || || || |||| || || ||||| | | |||||||| | || |||||
Sbjct 51522 GCTGGTGGCTCTCGGCAACGACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGA 51463
Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624
| ||| ||||| || |||||||||||||| || |||||||| | ||||| ||||
Sbjct 51462 GAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTACCAGAA 51403
Query 230625 GCCTGGTGTGATGAA 230639
| ||||||| |||||
Sbjct 51402 GGCTGGTGTCATGAA 51388
>seq26
Length=2648925
Score = 109 bits (120), Expect = 1e-18
Identities = 391/601 (65%), Gaps = 24/601 (4%)
Strand=Plus/Plus
Query 319013 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 319072
||||||| ||||| |||| ||| ||| |||| ||||| | ||||||||| |||||
Sbjct 449482 AACGCCACTGGATGTACTCCGAGGGAGTCTTGTCCAGATGGTTATCGATGTGGGCGAAAG 449541
Query 319073 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATGGTGG 319132
| ||||| | |||||||| ||| || || |||| ||| |||| |||||
Sbjct 449542 CGTGCTGCTTGATGTAAGCAATACGGATGTTCTCGTGCTGGTAAATCTCACCGGCGGTGG 449601
Query 319133 CTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCGCCCA 319192
||| | ||| || ||||| || ||||| || || || || ||||| ||| |
Sbjct 449602 GGACCAGCTCTCCGGTCAGCACGTTGATGAGCGTCGACTTTCCGGCTCCGTTGGGGCCAA 449661
Query 319193 CCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTT 319252
||| | || | ||| | || || |||| | | | | ||| | ||
Sbjct 449662 TAACAGCAATACGCGAGCTGAGAGAGCACTGGAAGGTGATATCGGCAATCTGGGGCTTGG 449721
Query 319253 CCGTACCCGGATACTTGAACCCCACACCGCGTAGCTT-CATGATGGCACGGTCCTTCGAA 319311
|| || || |||| ||| | || | ||||| || ||||| | |||| |
Sbjct 449722 AGGTGCCAGGGTACTGGAAGCTCAT-CTTAGTAGCACGCAGAATGGCCTTGGCCTTGGTC 449780
Query 319312 GTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGG 319371
||| |||||||||||| |||||||||||||| | || ||| || | |||
Sbjct 449781 TTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCAATCTCCGAGGCACCAAGC 449840
Query 319372 GCGTAGTAA---CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 319428
|||||||| | || || ||| | ||| |||||||||| ||| || ||||||
Sbjct 449841 TCGTAGTAAGACTTGGCCGA---GGGGCACTTGCGCACGAACTCGCGCAGGTTACCCTTG 449897
Query 319429 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT-GCAAACAGCGTCGAG 319487
|| ||| ||||| | | | ||||| ||||| || | | | ||| || ||||||
Sbjct 449898 TAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGATGAT-GTGCTGGCACACGTTGTCGAG 449953
Query 319488 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG----GTTGATCAGGT 319543
||| || |||||||| ||||| || | |||| || | ||| ||| |||||||
Sbjct 449954 GAAGCCAGAGTCGTGGGACACGAT---GATCGAA--GTGC--AAGGAGAGTTCATCAGGT 450006
Query 319544 ATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCA 319603
| || | |||| | ||||| |||| | ||||||||| |||||||| || ||||
Sbjct 450007 AGTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAGCAGCA 450066
Query 319604 G 319604
|
Sbjct 450067 G 450067
>seq25
Length=4183617
Score = 93.3 bits (102), Expect = 9e-14
Identities = 197/294 (67%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 319374 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 319433
|||||| ||| | ||||| ||| ||| ||||| ||| ||| || || ||||
Sbjct 21751 GTAGTAGCTCTTGGCCTCGGGCCGCACCTTGACGAAGGCGGCCAGGTTGCCGCGGTACAC 21692
Query 319434 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 319493
||||| ||| || ||||| ||| || |||| || ||||||||||| ||
Sbjct 21691 GGCTAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGGCGTCGAGGAAGCC 21632
Query 319494 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAA 319553
||||||||| ||||| |||| | | | ||| || || ||||||| | ||
Sbjct 21631 GGAGTCGTGGGACACGATCAGACTGGTGATATCCGGGTGGCTGGTCAGGTAGCCCTCCAG 21572
Query 319554 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGC 319613
|||| | ||||| | || | |||||||| || ||||| || ||||| | | ||
Sbjct 21571 CCACTTAACGTTGGCGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGCAGCACGTCGGC 21512
Query 319614 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667
|| | ||||| || || || || ||||| ||||| ||||| || ||||| ||
Sbjct 21511 CTTTTGCAGCATGGCGCGGGCCAGGGCGAGCTTCATCTTCCATCCACCGGACAG 21458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823606952270
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