Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 >seq2 Length=2210479 Score = 150 bits (166), Expect = 2e-31 Identities = 448/686 (65%), Gaps = 14/686 (2%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||||| | |||||| ||| | || ||||| ||||| |||||||| || ||| Sbjct 1077578 GGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATC 1077519 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || ||||| | || | |||||||| | ||||| ||||| |||||| ||| Sbjct 1077518 CACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGA 1077459 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 || | |||| | | | || | |||||||| || | ||| |||| | | || || Sbjct 1077458 TCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGG 1077399 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | || | |||||||| || | || | | ||| || Sbjct 1077398 CGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGG 1077339 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--T 54293 || ||||||||||| | |||||||| |||| ||||| || | ||||| ||| Sbjct 1077338 ATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGG 1077279 Query 54294 TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353 | |||| ||||| || || || ||||| || ||||| | ||||| || | | Sbjct 1077278 TGGACATTG--AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 1077221 Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413 | |||||||| ||||| || || |||||| |||||| || || || || || | | Sbjct 1077220 TGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCT 1077161 Query 54414 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 54473 || | || || || || || | ||| || || || || || || | || | Sbjct 1077160 GGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGG 1077101 Query 54474 AAAGTAGATTGTACGTCTCGAT----AGCT-GAGTCTATATCCCATTGATGAATTCCTAC 54528 | | | ||||| |||||||| ||| || | | |||| |||| || || Sbjct 1077100 ACATCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCC-CAGATG----CCAAC 1077046 Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAA 54588 || |||||||| | ||||||||| || | || || |||||| || | || |||| Sbjct 1077045 AGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAG 1076986 Query 54589 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 54648 ||| || || | || || || ||||| || | ||| ||||| || || || | Sbjct 1076985 GTAAGACCGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGAC 1076926 Query 54649 AATAACTGAGTTGAGTTTATCCTTAT 54674 ||| | |||| || | ||||||| Sbjct 1076925 AATGGCCGAGTCCAGCTCCTCCTTAT 1076900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721384775920