Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq29 129 7e-25 >seq29 Length=474253 Score = 129 bits (142), Expect = 7e-25 Identities = 194/274 (71%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 145995 GAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAA 146054 || |||||| |||||||| || || || || || | || |||||| |||| || || Sbjct 85420 GATCTGGTCGACGCCCTGTCCGGTATAGTCGGTTTTCGCATCGACGTACTCGGCACCAAA 85479 Query 146055 GTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCC 146114 ||| | ||||||||| ||||| || || |||| || ||| |||| ||| || || || Sbjct 85480 GTGGCGCCACTGGAAGCCGTACACCGGGCCCAAATCGCCGACTTCCCGGTGGCCTAGGCC 85539 Query 146115 GGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCG 146172 | | | | ||||||| || || || |||||| ||||||||||||||||||| | |||| Sbjct 85540 GACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCAACGTCGC- 85598 Query 146173 GAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCC 146232 ||| || ||| ||| || ||| |||||||||||||| ||| || | Sbjct 85599 -TCAGCGCAAGCGAGGACGTATTGGCCTCGATAAACCAGAGCAGCTCGACGATGATGGCT 85657 Query 146233 CTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 | ||| || | |||||| ||||| || |||| Sbjct 85658 CGGGTGAATACGCGCTTGGTCGTCAGGAGCGGGA 85691 Score = 114 bits (126), Expect = 2e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 || |||| |||||||| || | ||||| || || || || ||||| |||| ||||| Sbjct 85015 CAACTGGGTCTTCAGGGCATCGATGTGGTCGATATACACATGGGCGTCGCCCATCACGTG 85074 Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 ||| | |||||| | | | | | |||||| | ||||| |||| |||| ||| Sbjct 85075 AGTGAGGGTTCCGGGCACCAAGTCGCACACGTGGGCAATCATGTGCGTCAAAAGGGCGTA 85134 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 |||||| |||||||| ||||| || || |||||||| | || ||||||||||||||||| Sbjct 85135 GCTGGCAATGTTGAACGGCACACCGAGACCCATGTCGCAGGACCGCTGGTACAGCTGGCA 85194 Query 145851 G 145851 | Sbjct 85195 G 85195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076586097160