Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq25 116 3e-21
seq24 87.8 2e-12
>seq25
Length=4183617
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | |||||||| || | ||||||||||| || ||||| ||||| | |
Sbjct 2767735 CCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767676
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || ||||||||||||| || || || | || || | |||||| ||| |||
Sbjct 2767675 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767616
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| ||||| | ||| |||||| | |||
Sbjct 2767615 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACC 2767556
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || |||||||||||||| | || ||||| || || |||||
Sbjct 2767555 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | |||||||| || | ||||||||||| || ||||| ||||| | |
Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || ||||||| ||||| || || || | || || | |||||| ||| |||
Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| ||||| | ||| ||||| | |||
Sbjct 2767387 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACC 2767328
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || |||||||||||||| | || ||||| || || |||||
Sbjct 2767327 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
>seq24
Length=4186226
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/174 (71%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 38672 AACCAGTTTAACGCCGCCGACTCGCCGTACCGCGTGCTGCTCATGTCCATCAAGTGCGGC 38731
||| |||| |||| || || || ||||| ||||||||| || ||| || ||||
Sbjct 866692 AACAAGTTCAACGGCG---ACCCGTCGTACGACGTGCTGCTGCTGACCACCAGCGTCGGC 866636
Query 38732 GGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGGAAC 38791
||| | || || |||||||| |||| | || | ||| | | |||| ||||||||
Sbjct 866635 GGCCTCGGCCTCAACCTGACGGGCGCCGACACGGTGATCTTCGTCGAGCACGACTGGAAC 866576
Query 38792 CCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAG 38845
||||| | || |||||||| ||||| ||||||||| |||||||| |||
Sbjct 866575 CCGCAGAAGGACCTGCAGGCCATGGACCGGGCCCACCGCATCGGCCAGAAGAAG 866522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422259050757764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |