Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 421 7e-113 seq25 136 4e-27 seq23 109 6e-19 seq2 87.8 2e-12 >seq9 Length=477563 Score = 421 bits (466), Expect = 7e-113 Identities = 589/807 (73%), Gaps = 23/807 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| ||||||||||| | ||||||| | |||||| Sbjct 52250 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 52191 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | |||||| | ||| | | ||| ||||||| |||||| | Sbjct 52190 TCCAAGGATATCCATGACTGGAACAACCGCCTAACCGATGACGAGCGTTTCTTCATCTCG 52131 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| |||||||| |||||||| ||||||||||| |||||||||||| Sbjct 52130 CACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCGT 52071 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | | ||||||||||| | ||||| || |||||||||||||| |||||| || Sbjct 52070 TTCAGCGCCG-AGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 52012 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || ||| ||||| ||||| ||| | | || | | Sbjct 52011 GGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAGC-CCT 51953 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 || | | | | || | | || |||||||| || || || || ||| || |||||| Sbjct 51952 CGCA-GCGCACCTTC--CTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAAGG 51896 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| | |||||||| | || ||| | ||| |||| |||||||||| | Sbjct 51895 CCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGTCGTCCTACGGCCAGCGCCTGGTTG 51836 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTT-TTCGG-GCAGTTTCGCCGCCATATTTTGGCT 117105 |||| || |||||||||||| ||||||| ||| || | ||| || || || ||| | Sbjct 51835 CCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCG--ATCTTCTGGAT 51778 Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 |||||| |||||| | |||||||||||||| ||| ||||||||| ||||| | ||||| Sbjct 51777 CAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGA 51718 Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGC 117225 ||||||||| |||||| ||||| |||| ||| || | ||| || || ||| Sbjct 51717 GGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCACCTCAAGCACCGCCCCAGCAA 51658 Query 117226 GG-CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 || || ||| || ||| ||||||| || || ||||| |||||| ||| |||||| Sbjct 51657 GGACGTCATCCAGAGA-ATCATCACCGATGCCGTGGCCATTGAGCAGGAGTTCATCACCG 51599 Query 117285 AAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGA 117342 | || ||||| |||| |||||||| | || || | | |||| ||| |||||||| Sbjct 51598 AGGCTCTGCC-CTGCGCCCTGCTGGGCATGAA-CGCCACCCTGATGAAGCAGTACATCGA 51541 Query 117343 GTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAA 117402 ||||||||||||| | |||||| | | || | | || |||| |||||| | |||| Sbjct 51540 GTTCGTCGCCGACCGCCTGCTGGTGGCTCTCGGCAACGACAAGGTCTACAAGGCCACCAA 51481 Query 117403 CCCGCTGGACTTTATGAACCTCATCTC 117429 ||| | ||||| ||| | |||||| Sbjct 51480 CCCCTTCGACTTCATGGAGAACATCTC 51454 >seq25 Length=4183617 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| | | Sbjct 2767281 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGTCG 2767340 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| |||||||||||| |||| || Sbjct 2767341 GATACCATCGATAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCA 2767399 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || |||| |||||||| |||||||| Sbjct 2767400 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAA 2767459 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 2767460 CATCCAGAAGGAGTCCACCCTTCA 2767483 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || ||||| | | Sbjct 2767509 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGTCGTCT 2767568 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| |||||||||||| |||| || Sbjct 2767569 GATACCATCGATAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCA 2767627 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || |||||||| |||| |||||||| |||||||| Sbjct 2767628 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACAA 2767687 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| |||| || || | ||| | ||| Sbjct 2767688 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGC 2767724 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| | || || ||| | | Sbjct 2767737 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACGATCACCTTGGAAGTGGAATCATCG 2767796 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| || || |||||||||||| ||||||| Sbjct 2767797 GATACCATTGACAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCA 2767855 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| ||||| || || | ||||| || ||||||||| Sbjct 2767856 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCCGACTACAA 2767915 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| ||| || || || || | ||| || | || ||| Sbjct 2767916 CATCCAGAAGGAGAGCACTCTCCACCTGGTCCTCCGCCTGCGCGGTGGC 2767964 Score = 113 bits (124), Expect = 5e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| || || ||||||||| |||| ||||| | | || | | | | ||||| Sbjct 2767075 TCACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACTATCGACAATGTCAAGT 2767134 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||||||||| ||||||| || || || |||| || |||| Sbjct 2767135 CGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAACAGCGCCTGATCTTTGCTGGCA 2767194 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || |||| || |||||| |||||||||||||||||||||| | || || | Sbjct 2767195 AGCAGCTTGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCC 2767254 Query 40892 ATCTAGT 40898 |||| || Sbjct 2767255 ATCTCGT 2767261 >seq23 Length=4176071 Score = 109 bits (120), Expect = 6e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || |||||| | || || || || | Sbjct 893662 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 893603 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || || | ||||| |||||||| ||| ||||||| Sbjct 893602 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 893543 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || || | |||||||| |||||||||| Sbjct 893542 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 893483 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 893482 ATCCAGAAGG 893473 >seq2 Length=2210479 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||| || || || |||||| | || || || | | |||| | | Sbjct 113785 TTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCATC 113844 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| ||||||| || || || Sbjct 113845 GACAACG-TCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCT 113903 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || | || ||||| ||||| || || | || || || ||||||||||||||||| Sbjct 113904 TATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 113963 Query 40878 GG 40879 || Sbjct 113964 GG 113965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219013233040