Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq25 140 2e-28 seq23 96.9 2e-15 seq2 86.0 4e-12 >seq25 Length=4183617 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || |||||||| | ||| || || ||||| |||||||||||||| Sbjct 2767963 CCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 2767904 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| |||||||| || ||||||||||| ||| Sbjct 2767903 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 2767844 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | | | | || | ||| | ||||| || Sbjct 2767843 ATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACT 2767784 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || || || || ||||| ||||| ||||||||||| Sbjct 2767783 TCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| ||||||||||| ||||| ||| |||| Sbjct 2767720 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 2767661 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| ||||| |||||||| || ||| | || ||||||||| Sbjct 2767660 TCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 2767601 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | ||| ||||| |||| |||||||| Sbjct 2767600 TGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTC 2767541 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||||||||| Sbjct 2767540 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| ||||||||||| ||||| ||| |||| Sbjct 2767492 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 2767433 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| |||||||| || ||| | || ||||||||| Sbjct 2767432 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 2767373 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | ||| ||||| || | |||||||| Sbjct 2767372 TGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGAGTGATGGTC 2767313 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || ||||||||||| Sbjct 2767312 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || || || | ||| || ||||| |||||||||||||| Sbjct 2767279 CCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2767220 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | ||||||||| || || || || ||||| ||||| || Sbjct 2767219 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGG 2767160 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | ||| | || ||||| Sbjct 2767159 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATAGTATCCGAAGACTCGACC 2767100 Query 34343 TCCACCGTGATGGTTTTGCCGGTGA 34367 || | |||||||| || ||||||| Sbjct 2767099 TCGAGGGTGATGGTCTTTCCGGTGA 2767075 >seq23 Length=4176071 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||| || ||| | || || | ||||||||| || || || Sbjct 893475 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 893534 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||| ||||| ||| | || ||||||||| ||||| ||| | || | | Sbjct 893535 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 893594 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | ||| | || || || || | ||||| || ||||| || || || ||||| || Sbjct 893595 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 893654 Query 34382 ATCTGCAT 34389 |||||||| Sbjct 893655 ATCTGCAT 893662 >seq2 Length=2210479 Score = 86.0 bits (94), Expect = 4e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| ||||| ||| | || || | ||||||||| || ||||| Sbjct 113963 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 113904 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||| ||||| ||| | || ||||||||| ||||| ||| | | | | Sbjct 113903 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCG 113844 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | || | || || || || | ||||| || || ||||||||||| || || ||| Sbjct 113843 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAAG 113784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071885814240