Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq12 132 1e-25 seq7 107 4e-18 >seq12 Length=3629062 Score = 132 bits (146), Expect = 1e-25 Identities = 271/400 (68%), Gaps = 26/400 (7%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| |||| || || ||||| |||||||| || |||||||| ||||| ||| Sbjct 282978 TGCTCTTCTACGGCCCCCCGGGAACCGGCAAGACATCGACCATCCTCGCGCTCGCCAAGG 283037 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130 || | ||| || || |||| |||||||||||||||||||| || ||||| | Sbjct 283038 AGCTCTACGGCCCGGAGATGATGAAGTCCCGCGTGCTCGAGCTGAACGCCTCCGACGAGC 283097 Query 254131 GCGGG--TTGGACGTCGTCCGCGACAAGATCAA-GACTTTCTCCA-----AGATGTCGAT 254182 |||| || || |||| ||||| || |||| ||||| || || || | | Sbjct 283098 GCGGCATTTCGA--TCGTGCGCGAAAAAGTCAAAGACTTCGCCCGCATGCAGCTGACCAA 283155 Query 254183 TTCGTCG------TTCCA--------ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTG 254228 || || | ||| ||||| || ||||| |||||| || | ||||| Sbjct 283156 CCCGCCGCCGCACTACCAGGACCGCTACCCG--TGCCCGCCGTTCAAGATCATCATCCTC 283213 Query 254229 GACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACG 254288 |||||||| ||| | ||||| ||||| ||| |||||| ||||| || |||||||| Sbjct 283214 GACGAGGCCGACTCAATGACCCAGGACGCCCAGAGCGCCCTACGCCGCACCATGGAGACC 283273 Query 254289 CACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCG 254348 || | | || || || ||||| | ||||||||||| | ||||||| |||| Sbjct 283274 TACAGCAAAATCACCCGCTTCTGCCTCATCTGCAACTACGTCACCCGCATCATCGACCCG 283333 Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388 ||||| || ||| |||||| || |||| | ||||| Sbjct 283334 CTGGCCAGCCGCTGCAGCAAGTTCCGCTTCAAGAGCCTCG 283373 >seq7 Length=520767 Score = 107 bits (118), Expect = 4e-18 Identities = 261/392 (67%), Gaps = 24/392 (6%) Strand=Plus/Minus Query 254020 ACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGG 254079 |||| || |||||||| |||||||| || || ||||| ||||| || || | | | | Sbjct 349943 ACGGGCCCCCCGGAACCGGCAAGACCTCGACGATCCTCGCGCTTGCGCGCCGCATCTACG 349884 Query 254080 GCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGG 254139 ||| | |||||| | || ||||||||||||||||| || ||||| ||||| | | Sbjct 349883 GCGCCGCCAACATGCGCCAGATGGTGCTCGAGCTGAACGCCTCCGACGACCGCGGCATCG 349824 Query 254140 ACGTCGTCCGCGACAAGATCAAGACTTT---CTCCA------AGA---TGTCGAT----- 254182 |||| || ||||| |||||||||| || || | ||| | || || Sbjct 349823 ACGTGGTGCGCGAGCAGATCAAGACCTTTGCGTCGACCCGGCAGATCTTCTCAATGGGCG 349764 Query 254183 -TTCGTCGTTC-CAAC--CCGGCTGTCCGC---CTTTCAAGCTCGTGATCCTGGACGAGG 254235 |||| || | | | ||||| | ||| | | ||||||| | ||||| ||||||| Sbjct 349763 CTTCGGCGGGCGCGTCCGCCGGCGGCGCGCCCACCTACAAGCTCATCATCCTCGACGAGG 349704 Query 254236 CGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCG 254295 | ||| ||||||| | ||||||| ||||| ||||| | ||||||| | || ||| Sbjct 349703 CCGACGCCATGACCAACACCGCGCAGATGGCCCTGCGCCGCATCATGGAGAAGTACACCG 349644 Query 254296 TTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTT 254355 ||||| || ||| | | |||||||| ||| || | || ||||| | Sbjct 349643 CCAACACGCGCTTCTGCGTCATCGCCAACTACGCCCACAAGCTCTCCCCCGCGCTGCTGT 349584 Query 254356 CTCGGTGCGCCAAGTTTCGATTCAGCACCCTC 254387 | || ||| | ||| || |||||| | ||| Sbjct 349583 CGCGCTGCACGCGGTTCCGCTTCAGCCCGCTC 349552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766001028672