Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq12 132 1e-25
seq7 107 4e-18
>seq12
Length=3629062
Score = 132 bits (146), Expect = 1e-25
Identities = 271/400 (68%), Gaps = 26/400 (7%)
Strand=Plus/Plus
Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070
|||| ||| |||| || || ||||| |||||||| || |||||||| ||||| |||
Sbjct 282978 TGCTCTTCTACGGCCCCCCGGGAACCGGCAAGACATCGACCATCCTCGCGCTCGCCAAGG 283037
Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130
|| | ||| || || |||| |||||||||||||||||||| || ||||| |
Sbjct 283038 AGCTCTACGGCCCGGAGATGATGAAGTCCCGCGTGCTCGAGCTGAACGCCTCCGACGAGC 283097
Query 254131 GCGGG--TTGGACGTCGTCCGCGACAAGATCAA-GACTTTCTCCA-----AGATGTCGAT 254182
|||| || || |||| ||||| || |||| ||||| || || || | |
Sbjct 283098 GCGGCATTTCGA--TCGTGCGCGAAAAAGTCAAAGACTTCGCCCGCATGCAGCTGACCAA 283155
Query 254183 TTCGTCG------TTCCA--------ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTG 254228
|| || | ||| ||||| || ||||| |||||| || | |||||
Sbjct 283156 CCCGCCGCCGCACTACCAGGACCGCTACCCG--TGCCCGCCGTTCAAGATCATCATCCTC 283213
Query 254229 GACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACG 254288
|||||||| ||| | ||||| ||||| ||| |||||| ||||| || ||||||||
Sbjct 283214 GACGAGGCCGACTCAATGACCCAGGACGCCCAGAGCGCCCTACGCCGCACCATGGAGACC 283273
Query 254289 CACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCG 254348
|| | | || || || ||||| | ||||||||||| | ||||||| ||||
Sbjct 283274 TACAGCAAAATCACCCGCTTCTGCCTCATCTGCAACTACGTCACCCGCATCATCGACCCG 283333
Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388
||||| || ||| |||||| || |||| | |||||
Sbjct 283334 CTGGCCAGCCGCTGCAGCAAGTTCCGCTTCAAGAGCCTCG 283373
>seq7
Length=520767
Score = 107 bits (118), Expect = 4e-18
Identities = 261/392 (67%), Gaps = 24/392 (6%)
Strand=Plus/Minus
Query 254020 ACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGG 254079
|||| || |||||||| |||||||| || || ||||| ||||| || || | | | |
Sbjct 349943 ACGGGCCCCCCGGAACCGGCAAGACCTCGACGATCCTCGCGCTTGCGCGCCGCATCTACG 349884
Query 254080 GCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGG 254139
||| | |||||| | || ||||||||||||||||| || ||||| ||||| | |
Sbjct 349883 GCGCCGCCAACATGCGCCAGATGGTGCTCGAGCTGAACGCCTCCGACGACCGCGGCATCG 349824
Query 254140 ACGTCGTCCGCGACAAGATCAAGACTTT---CTCCA------AGA---TGTCGAT----- 254182
|||| || ||||| |||||||||| || || | ||| | || ||
Sbjct 349823 ACGTGGTGCGCGAGCAGATCAAGACCTTTGCGTCGACCCGGCAGATCTTCTCAATGGGCG 349764
Query 254183 -TTCGTCGTTC-CAAC--CCGGCTGTCCGC---CTTTCAAGCTCGTGATCCTGGACGAGG 254235
|||| || | | | ||||| | ||| | | ||||||| | ||||| |||||||
Sbjct 349763 CTTCGGCGGGCGCGTCCGCCGGCGGCGCGCCCACCTACAAGCTCATCATCCTCGACGAGG 349704
Query 254236 CGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCG 254295
| ||| ||||||| | ||||||| ||||| ||||| | ||||||| | || |||
Sbjct 349703 CCGACGCCATGACCAACACCGCGCAGATGGCCCTGCGCCGCATCATGGAGAAGTACACCG 349644
Query 254296 TTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTT 254355
||||| || ||| | | |||||||| ||| || | || ||||| |
Sbjct 349643 CCAACACGCGCTTCTGCGTCATCGCCAACTACGCCCACAAGCTCTCCCCCGCGCTGCTGT 349584
Query 254356 CTCGGTGCGCCAAGTTTCGATTCAGCACCCTC 254387
| || ||| | ||| || |||||| | |||
Sbjct 349583 CGCGCTGCACGCGGTTCCGCTTCAGCCCGCTC 349552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073766001028672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |