Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 349 3e-91 seq9 187 2e-42 seq25 89.7 5e-13 >seq2 Length=2210479 Score = 349 bits (386), Expect = 3e-91 Identities = 1223/1888 (65%), Gaps = 38/1888 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTAT-GGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163 |||||| || || ||||| || |||| || || | | ||| || || || ||||||| Sbjct 1078785 CTTGTCAACAGTGAACTGGATAGGCGCC-GCAGCAGCCTGGGTACGGAGGTAGTACATGC 1078727 Query 22164 CCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG 22223 | ||||| ||||| | |||||| || || || || || | || || | | Sbjct 1078726 CGGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGG 1078667 Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | | ||||| | || | ||||| ||| || || || || || |||||||| | Sbjct 1078666 GGTCCTTCATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGATCGGCAG 1078607 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | | | || ||| || |||||||| || ||||||||||| | |||| | Sbjct 1078606 CCATCTGCACGACAGTGCGCTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATGT 1078547 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || | || |||||| || ||||| | | ||||| || || | Sbjct 1078546 CAGCAGGGATGCTGGCAATGTTCTGGATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCA 1078487 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGG-TTCACCACT 22462 ||| || ||||| || | | || | ||| || || | |||| || ||||| Sbjct 1078486 TCGAGTCCGACCACAGGCCAAGGTCGACTAGATCGCGGAGCA-ACCACGGGTTGACCACC 1078428 Query 22463 TGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || ||||| || | |||| || ||||| ||||| || ||||| ||| |||| || || | Sbjct 1078427 TGGAACTCTCCAG-CAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGGCTCAAAGCA 1078369 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 || ||||| || || ||||| | ||| || || ||||| || |||| ||| || Sbjct 1078368 CTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACT 1078309 Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATC 22638 ||| | | ||||| |||| | | ||| || || | ||||||||| || || Sbjct 1078308 GTTGCGAACACCGTGAAGCTTGA---TCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTC 1078252 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACGCCGCGACTCGCCGGGCTG 22696 || ||| | ||||| |||||| || | |||| | || | | || || || | Sbjct 1078251 GGTGGGCTTGACATT---CCACATGTCAAACTGCAGGATACCCTGAGAGACG--GGAGAG 1078197 Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCG-CCTCCAACGC 22755 || || || || ||| | || | | ||| | || || | | || || || Sbjct 1078196 CCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTC-CACCGAGGCCGACAGAGC 1078138 Query 22756 GCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTA 22815 ||| || || ||||||||||| | || ||||| || || || || || | Sbjct 1078137 AGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAA 1078078 Query 22816 CGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875 ||||| |||| | ||| || || || | ||||||||| || | |||||| || || Sbjct 1078077 GGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGAACACCAACACCGATGGGGCG 1078018 Query 22876 GTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTG 22931 || || || || |||| |||||||| || || || ||| || Sbjct 1078017 GTGGCGCATGTTG----CTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGA 1077962 Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991 | | ||||| ||| | | || | | || | |||||||| || | Sbjct 1077961 TGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCATACA 1077902 Query 22992 CGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCA 23048 ||||| ||||| |||| | | | |||| ||||| || ||||| || |||| Sbjct 1077901 CGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAGGGAGGCCAGGTTGCACACAGCCA 1077842 Query 23049 CCTCGTCTTTGGA-CGT-GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||| || ||| || |||||| | || || || || || ||| | || || Sbjct 1077841 CCTCATCG--GGAGCGCAGTACTCAATGATCTCTGTGCACAGGTTGGAGCTGCGAATGGT 1077784 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 |||| || |||||||||| || || ||||| |||||||| |||||| | || | Sbjct 1077783 ACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTT 1077724 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226 ||| |||||| ||| | ||||| ||| || ||||| ||||||| | | ||| Sbjct 1077723 GCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTGATG-GTCT 1077665 Query 23227 CACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAAC 23285 || | | || || |||||||||| | ||||| || || || || | ||||| | Sbjct 1077664 TGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGC 1077605 Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAA 23345 ||||||| || ||||| | | | || ||||| ||| ||||| | || || || | Sbjct 1077604 AGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGA 1077545 Query 23346 CGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCT 23405 | || |||| || ||||| || ||||| ||||| ||||| || | |||||| |||| Sbjct 1077544 CTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCT 1077485 Query 23406 CCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCT 23465 |||| || || ||||| || ||||| || || |||||||| || |||||||||| Sbjct 1077484 CCTCCTTTCCATGATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCT 1077425 Query 23466 CGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCG 23525 ||||||| | |||||| ||||| || | ||| ||||||||||| || || || ||||| | Sbjct 1077424 CGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGG 1077365 Query 23526 TGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA 23585 |||||||| |||| | ||||| || | || ||| ||||||| ||| || || | Sbjct 1077364 TGTTGTTGAACACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAA 1077305 Query 23586 CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCG 23645 | ||||| | || || | ||| || | || ||| ||||| || || || | Sbjct 1077304 TATAAGAACCGGTAGCACGGATACGGTGGACATTGAGACCAATGCCACCAGCCATCTTGG 1077245 Query 23646 ATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCG 23705 | ||||| ||||| || || ||||| ||||| ||||| |||||||| || || | Sbjct 1077244 AGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGT 1077185 Query 23706 CGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGC 23765 | |||| ||| ||||| || | || || | || ||| | || ||| || || ||| Sbjct 1077184 CAACCAGGAAGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGG 1077125 Query 23766 TGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGT 23825 ||| || || ||| | | ||||| | ||||| || |||||| | || | || Sbjct 1077124 AGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACACGCTCGACGT 1077065 Query 23826 CCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGA 23885 ||||| || || | || || ||||| ||||||| || || | |||||| | Sbjct 1077064 TGTCTCCCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCT 1077005 Query 23886 CGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGT 23945 ||||| || |||| ||| || || || | | || || || ||||| || | |||| Sbjct 1077004 TGCCGTCAAGCTTGAGCAGGTAAGACCGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGT 1076945 Query 23946 TAAAGTCACGATCGTGCACTATGGCCGA 23973 | ||||| || || | || |||||||| Sbjct 1076944 TGAAGTCCCGGTCATAGACAATGGCCGA 1076917 >seq9 Length=477563 Score = 187 bits (206), Expect = 2e-42 Identities = 565/861 (66%), Gaps = 29/861 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || ||||| ||||| | ||| || | |||||| Sbjct 52250 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 52191 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGA-GAGAAATTTT--ATTAAA 57686 || |||||| | || ||| | || | | ||| ||| || | || Sbjct 52190 TCCAAGGATATCCATGACTGGAACAACCGCCTAACCGATGACGAGCGTTTCTTCATCTCG 52131 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || || |||||||| || || || ||||| |||||||| ||||||| | Sbjct 52130 CACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCG- 52072 Query 57747 TTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| || ||||| ||| | ||||| | ||||| ||||| || || | | Sbjct 52071 -TTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 52013 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAA 57862 | || ||| | || || || | || ||||| ||||| || || ||| | ||||| | Sbjct 52012 TGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAGCCCT 51953 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 || | | | | | || |||||||| || || || || ||| ||| ||||||||| Sbjct 51952 CGCAGCGCACCTTC--CTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAAGGC 51895 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCG---AGAGGCTAAT 57979 || ||| | ||| ||||| | | || || ||| | || || | || | Sbjct 51894 CGACTGGGCCATCCGCTGGATTCAG---GACAAGGAGTCGTCCTACGGCCAGCGCCTGGT 51838 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || ||||||||||| || || ||||| || ||| || | || || ||||| Sbjct 51837 TGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGGAT 51778 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| |||||| |||||||||||||||| || ||||||| |||| ||||| ||||| Sbjct 51777 CAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGA 51718 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC- 58158 |||||| || || || || || ||||| | | ||| ||| |||| |||| | | Sbjct 51717 GGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCAC---CTCAA-GCACCGCCCCA 51662 Query 58159 ---GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 ||| |||| | || |||||||| || || || || || | ||||| ||| Sbjct 51661 GCAAGGACGTCATCCAGAGAATCATCACCGATGCCGTGGCCATTGAGCAGGAGTTCATCA 51602 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 |||| || || || ||| |||| || |||||| ||||| ||||||| | Sbjct 51601 CCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCG 51542 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAA 58333 |||| || |||||| | || || | | || | || | ||| ||||| | | Sbjct 51541 AGTTCGTCGCCGACCGCCTGCTGGTGGCTCTCGGCAACGACAAGGTC--TACAAGGCCAC 51484 Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaa 58393 || || || || || ||| | |||||||| | |||||||| ||||| || || || Sbjct 51483 CAACCCCTTCGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAA 51424 Query 58394 aaaaGTTAGCGAATATCAAAA 58414 ||| |||| || || || Sbjct 51423 GCGTGTTGGCGACTACCAGAA 51403 >seq25 Length=4183617 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || ||||| | || || || |||| Sbjct 2767509 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGTCGTCT 2767568 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||||||||| ||| | || || || ||| Sbjct 2767569 GATACCATCGATAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 2767628 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| |||| ||| || || || || ||| Sbjct 2767629 CAGCGTCTCATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACAAC 2767688 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || ||||| |||| || Sbjct 2767689 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCT 2767720 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || ||||||||| | || || ||| | || Sbjct 2767737 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACGATCACCTTGGAAGTGGAATCATCG 2767796 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || || ||| ||||| ||| | || || |||||| Sbjct 2767797 GATACCATTGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCAG 2767856 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||||||||| ||| | || || Sbjct 2767857 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGA 2767891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766238409680