Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 111 3e-19 seq9 109 1e-18 >seq2 Length=2210479 Score = 111 bits (122), Expect = 3e-19 Identities = 418/649 (64%), Gaps = 10/649 (2%) Strand=Plus/Minus Query 94399 CCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGG 94458 || |||||||| || |||||||||| |||| ||||| ||||| | | ||||| ||| Sbjct 1077653 CCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGA 1077594 Query 94459 CCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCC 94515 || |||||||||| |||||||||||| | ||| || | |||| |||| || | Sbjct 1077593 CCGGGGCACTCGTTGGGGCACATCAGAGTCCA---CTCGGCGTTCTTCTCGACTCGCTTC 1077537 Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575 ||||||||||| | | ||| | ||| |||| | ||| || | | | || || || Sbjct 1077536 ATGAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTT 1077477 Query 94576 CCGGCATTCTTTCTGCAG-TCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATA 94634 || |||||| | |||| || || || || |||||| ||||| | || Sbjct 1077476 CCATGATTCTTGC-GCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTA 1077418 Query 94635 GATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTT 94694 |||||| || || | ||||| || |||||| ||| | | | | ||| Sbjct 1077417 GATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTT 1077358 Query 94695 AAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGAAATGGGGCT 94754 || | | || | | |||| |||| | || ||| | | | ||| Sbjct 1077357 GAACACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGA 1077298 Query 94755 TCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGAT 94814 || | || | | | || | | || || | || ||||| |||||||||| || Sbjct 1077297 ACCGGTAGCACGGATACGGTGGACATTGAGACCAATGCCACCAGCCATCTTGGAGATCAT 1077238 Query 94815 TGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAG 94874 || ||| || || ||||| |||||||||||||| ||||| | | | | | || Sbjct 1077237 GGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAG 1077178 Query 94875 GAAGCACGAGGAAAGTTGGG-GTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCAT 94933 ||||||||| || || |||| || | || ||| || || || |||||||| |||| Sbjct 1077177 GAAGCACGACGAGAGCTGGGCCTGCG-GGGTACCAGCGTTGAAGAGGGTGGGGGAGGCAT 1077119 Query 94934 GGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATC 94993 |||| || | | || ||||| | | || || || |||||| | || || || Sbjct 1077118 GGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTC 1077059 Query 94994 CGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 | ||||| ||||| |||||||| ||||||| ||| |||||||| || Sbjct 1077058 CCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGAC 1077010 >seq9 Length=477563 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || || || |||||||| || ||||| ||| | || || |||||| Sbjct 51839 GTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGG 51780 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 |||||||| | || || |||| || || |||| |||||| ||| | || || | ||| Sbjct 51779 ATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGAC 51720 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || ||||| || |||||| || ||| |||| || Sbjct 51719 GAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTT 51685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583632307695