Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 3e-19
seq9 109 1e-18
>seq2
Length=2210479
Score = 111 bits (122), Expect = 3e-19
Identities = 418/649 (64%), Gaps = 10/649 (2%)
Strand=Plus/Minus
Query 94399 CCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGG 94458
|| |||||||| || |||||||||| |||| ||||| ||||| | | ||||| |||
Sbjct 1077653 CCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGA 1077594
Query 94459 CCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCC 94515
|| |||||||||| |||||||||||| | ||| || | |||| |||| || |
Sbjct 1077593 CCGGGGCACTCGTTGGGGCACATCAGAGTCCA---CTCGGCGTTCTTCTCGACTCGCTTC 1077537
Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575
||||||||||| | | ||| | ||| |||| | ||| || | | | || || ||
Sbjct 1077536 ATGAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTT 1077477
Query 94576 CCGGCATTCTTTCTGCAG-TCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATA 94634
|| |||||| | |||| || || || || |||||| ||||| | ||
Sbjct 1077476 CCATGATTCTTGC-GCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTA 1077418
Query 94635 GATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTT 94694
|||||| || || | ||||| || |||||| ||| | | | | |||
Sbjct 1077417 GATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTT 1077358
Query 94695 AAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGAAATGGGGCT 94754
|| | | || | | |||| |||| | || ||| | | | |||
Sbjct 1077357 GAACACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGA 1077298
Query 94755 TCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGAT 94814
|| | || | | | || | | || || | || ||||| |||||||||| ||
Sbjct 1077297 ACCGGTAGCACGGATACGGTGGACATTGAGACCAATGCCACCAGCCATCTTGGAGATCAT 1077238
Query 94815 TGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAG 94874
|| ||| || || ||||| |||||||||||||| ||||| | | | | | ||
Sbjct 1077237 GGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAG 1077178
Query 94875 GAAGCACGAGGAAAGTTGGG-GTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCAT 94933
||||||||| || || |||| || | || ||| || || || |||||||| ||||
Sbjct 1077177 GAAGCACGACGAGAGCTGGGCCTGCG-GGGTACCAGCGTTGAAGAGGGTGGGGGAGGCAT 1077119
Query 94934 GGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATC 94993
|||| || | | || ||||| | | || || || |||||| | || || ||
Sbjct 1077118 GGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTC 1077059
Query 94994 CGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042
| ||||| ||||| |||||||| ||||||| ||| |||||||| ||
Sbjct 1077058 CCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGAC 1077010
>seq9
Length=477563
Score = 109 bits (120), Expect = 1e-18
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||||||||| || || || || |||||||| || ||||| ||| | || || ||||||
Sbjct 51839 GTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGG 51780
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
|||||||| | || || |||| || || |||| |||||| ||| | || || | |||
Sbjct 51779 ATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGAC 51720
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072
|| ||||| || |||||| || ||| |||| ||
Sbjct 51719 GAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTT 51685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583632307695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |