Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 1e-28
seq9 95.1 2e-14
>seq2
Length=2210479
Score = 141 bits (156), Expect = 1e-28
Identities = 446/686 (65%), Gaps = 14/686 (2%)
Strand=Plus/Minus
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293
|| ||||||| | |||||| ||| | || ||||| ||||| |||||||| || |||
Sbjct 1077578 GGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATC 1077519
Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353
|| ||||| | || | |||||| | | ||||| ||||| |||||| |||
Sbjct 1077518 CACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGA 1077459
Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413
|| | |||| | | | || | |||||||| || | ||| ||||| | | || ||
Sbjct 1077458 TCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGG 1077399
Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473
|| ||||| || ||||| || | || | |||||||| || | || | | ||| ||
Sbjct 1077398 CGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGG 1077339
Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT-- 63531
|| ||||| || || | |||||||| |||| ||||| || | ||||| |||
Sbjct 1077338 ATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGG 1077279
Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591
| ||||| |||| || || || ||||| || ||||| | ||||| || | |
Sbjct 1077278 TGGACATTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 1077221
Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651
|||||||||| || || ||||| ||||| |||||| || || || || || | |
Sbjct 1077220 TGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCT 1077161
Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711
|| | | || || || || || | ||| || || || || || || | || |
Sbjct 1077160 GGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGG 1077101
Query 63712 AAAGTAGATTGTACGTCTCAAT----AGCT-GAGTCTATATCCCATTGATGAATTCCTAC 63766
| | | ||||| ||||| || ||| || | | |||| |||| || ||
Sbjct 1077100 ACATCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCC-CAGATG----CCAAC 1077046
Query 63767 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAA 63826
|| |||||||| | ||||||||| || | || ||||| ||| || | || | ||
Sbjct 1077045 AGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAG 1076986
Query 63827 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63886
||| || || | || || || ||||| || | ||| ||||| || || || |
Sbjct 1076985 GTAAGACCGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGAC 1076926
Query 63887 AATAACCGAATTGAGCTTATCCTTAT 63912
||| |||| | |||| |||||||
Sbjct 1076925 AATGGCCGAGTCCAGCTCCTCCTTAT 1076900
>seq9
Length=477563
Score = 95.1 bits (104), Expect = 2e-14
Identities = 362/562 (64%), Gaps = 16/562 (3%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| ||||| ||| ||||||||||||||| | || | ||||| || || || ||
Sbjct 51694 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 51753
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|||||||| | ||| ||||| || | ||| || || || | ||| | ||| ||||||
Sbjct 51754 CCGGGCATCATGCCGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 51813
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGC--TGTCATGT 33758
|| || || || || |||||||||| || | || || || || | | |||| ||
Sbjct 51814 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGA 51873
Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817
||||| | || ||||| ||||||||||| | || || || || || ||||| ||
Sbjct 51874 ATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTT 51932
Query 33818 AAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCAAAAGACTAT 33873
||||| || | | | | | || || | || || || || | || |
Sbjct 51933 GAAGAGGAAG----GTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCGAGT 51988
Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933
| | || || || ||||| || || ||||| || |||||||| || | ||||| |
Sbjct 51989 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAG 52048
Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993
| |||||| || | | || || || | | || || || || || || ||| |
Sbjct 52049 GCACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGACG 52108
Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTAT 34050
| || || || || | | || || || | ||||| |||| | || |
Sbjct 52109 CGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGGTTAGGCGGTTGT 52168
Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110
|||| |||| |||||| || || | || | || || | ||||| || || ||||| |
Sbjct 52169 TCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCTCAG 52228
Query 34111 CCTTTTTATACATATTCCAGAT 34132
|||| || ||||| | ||||||
Sbjct 52229 CCTTCTTGTACATCTGCCAGAT 52250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817371691120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |