Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 seq9 95.1 2e-14 >seq2 Length=2210479 Score = 141 bits (156), Expect = 1e-28 Identities = 446/686 (65%), Gaps = 14/686 (2%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||||| | |||||| ||| | || ||||| ||||| |||||||| || ||| Sbjct 1077578 GGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATC 1077519 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || ||||| | || | |||||| | | ||||| ||||| |||||| ||| Sbjct 1077518 CACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGA 1077459 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 || | |||| | | | || | |||||||| || | ||| ||||| | | || || Sbjct 1077458 TCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGG 1077399 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | || | |||||||| || | || | | ||| || Sbjct 1077398 CGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGG 1077339 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT-- 63531 || ||||| || || | |||||||| |||| ||||| || | ||||| ||| Sbjct 1077338 ATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGG 1077279 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | ||||| |||| || || || ||||| || ||||| | ||||| || | | Sbjct 1077278 TGGACATTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 1077221 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 |||||||||| || || ||||| ||||| |||||| || || || || || | | Sbjct 1077220 TGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCT 1077161 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 || | | || || || || || | ||| || || || || || || | || | Sbjct 1077160 GGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGG 1077101 Query 63712 AAAGTAGATTGTACGTCTCAAT----AGCT-GAGTCTATATCCCATTGATGAATTCCTAC 63766 | | | ||||| ||||| || ||| || | | |||| |||| || || Sbjct 1077100 ACATCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCC-CAGATG----CCAAC 1077046 Query 63767 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAA 63826 || |||||||| | ||||||||| || | || ||||| ||| || | || | || Sbjct 1077045 AGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCCGTCAAGCTTGAGCAG 1076986 Query 63827 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63886 ||| || || | || || || ||||| || | ||| ||||| || || || | Sbjct 1076985 GTAAGACCGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGAC 1076926 Query 63887 AATAACCGAATTGAGCTTATCCTTAT 63912 ||| |||| | |||| ||||||| Sbjct 1076925 AATGGCCGAGTCCAGCTCCTCCTTAT 1076900 >seq9 Length=477563 Score = 95.1 bits (104), Expect = 2e-14 Identities = 362/562 (64%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||||||||||||||| | || | ||||| || || || || Sbjct 51694 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 51753 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| | ||| ||||| || | ||| || || || | ||| | ||| |||||| Sbjct 51754 CCGGGCATCATGCCGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 51813 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGC--TGTCATGT 33758 || || || || || |||||||||| || | || || || || | | |||| || Sbjct 51814 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGA 51873 Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | || ||||| ||||||||||| | || || || || || ||||| || Sbjct 51874 ATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTT 51932 Query 33818 AAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCAAAAGACTAT 33873 ||||| || | | | | | || || | || || || || | || | Sbjct 51933 GAAGAGGAAG----GTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCGAGT 51988 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 | | || || || ||||| || || ||||| || |||||||| || | ||||| | Sbjct 51989 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAG 52048 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | |||||| || | | || || || | | || || || || || || ||| | Sbjct 52049 GCACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGACG 52108 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTAT 34050 | || || || || | | || || || | ||||| |||| | || | Sbjct 52109 CGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGGTTAGGCGGTTGT 52168 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 |||| |||| |||||| || || | || | || || | ||||| || || ||||| | Sbjct 52169 TCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCTCAG 52228 Query 34111 CCTTTTTATACATATTCCAGAT 34132 |||| || ||||| | |||||| Sbjct 52229 CCTTCTTGTACATCTGCCAGAT 52250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817371691120