Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq25 91.5 1e-13
seq9 91.5 1e-13
>seq25
Length=4183617
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||||| || ||||| || || ||||| || || |
Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||| |||||||| || ||||| |||| ||||| |||||||| || ||
Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716
||||| || ||||| ||| | || | || | | || | || || | | ||| ||
Sbjct 2767387 ATGCCCTCCTTGTCC-TGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGAC 2767329
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| || | ||||||||||| | || || ||||| || ||||||
Sbjct 2767328 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 2767280
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || |||| || | || ||||||| || ||||| || || ||||| || || |
Sbjct 2767735 CCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767676
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||| || ||||| || ||||| |||| ||||| |||||||| || ||
Sbjct 2767675 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767616
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716
||||| || ||||| ||| | || | || | | || | || || | | ||| ||
Sbjct 2767615 ATGCCCTCCTTGTCC-TGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGAC 2767557
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||| | || | ||||||||||||| || || ||||| || ||||||
Sbjct 2767556 CTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATA 2767508
>seq9
Length=477563
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896
|| ||||| | |||||| | ||||| | || || ||| | ||| | || |||||
Sbjct 51632 GATGCCGTGGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGC 51573
Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956
|||||||| ||| ||||| ||||||||||||| || || ||| | ||| || ||
Sbjct 51572 ATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCT 51513
Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016
||||| | || ||| || || |||||||| || ||| | ||||| |||
Sbjct 51512 CTCGGCAACGACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCG 51453
Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061
|| | ||||| || ||||| || |||| ||||| ||||| |||
Sbjct 51452 CTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTAC 51408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063820176800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |