Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq25 91.5 1e-13 seq9 91.5 1e-13 >seq25 Length=4183617 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || || ||||| || || | Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || ||||| |||| ||||| |||||||| || || Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | || || | | ||| || Sbjct 2767387 ATGCCCTCCTTGTCC-TGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGAC 2767329 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | ||||||||||| | || || ||||| || |||||| Sbjct 2767328 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 2767280 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| || | || ||||||| || ||||| || || ||||| || || | Sbjct 2767735 CCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767676 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || ||||| |||| ||||| |||||||| || || Sbjct 2767675 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767616 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | || || | | ||| || Sbjct 2767615 ATGCCCTCCTTGTCC-TGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGAC 2767557 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||||||||||| || || ||||| || |||||| Sbjct 2767556 CTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATA 2767508 >seq9 Length=477563 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 || ||||| | |||||| | ||||| | || || ||| | ||| | || ||||| Sbjct 51632 GATGCCGTGGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGC 51573 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||||| ||| ||||| ||||||||||||| || || ||| | ||| || || Sbjct 51572 ATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCT 51513 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016 ||||| | || ||| || || |||||||| || ||| | ||||| ||| Sbjct 51512 CTCGGCAACGACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCG 51453 Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 || | ||||| || ||||| || |||| ||||| ||||| ||| Sbjct 51452 CTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTAC 51408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063820176800