Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 163 4e-35 seq9 111 2e-19 >seq2 Length=2210479 Score = 163 bits (180), Expect = 4e-35 Identities = 460/701 (66%), Gaps = 14/701 (2%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || |||| || ||||||| | |||||| | | | || ||||| ||||| Sbjct 1077593 CCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATG 1077534 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 |||||||| || ||||| ||||| | || | |||||||| | |||||| ||||| Sbjct 1077533 AAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCA 1077474 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 |||||| ||||| | |||| | | | || | |||||||| || | ||| ||| Sbjct 1077473 TGATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATG 1077414 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | || | |||||||| || | Sbjct 1077413 GCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAAC 1077354 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | | ||| || || ||||||||||| || |||||||| |||| ||||| || Sbjct 1077353 ACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCG 1077294 Query 80191 CTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 | ||||| ||| | |||| ||||| || || || ||||| || ||||| | | Sbjct 1077293 GTAGCACGGATACGGTGGACATTG--AGACCAATGCCACCAGCCATCTTGGAGATCATGG 1077236 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 |||| || | || |||||||| ||||| ||||| ||||| |||||| || || | Sbjct 1077235 CGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGA 1077176 Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368 | || || | ||| | || || || || || | ||| || || || || | Sbjct 1077175 AGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGG 1077116 Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCT-GATTCTATATCCCA 80423 | || | || |||| | ||||| ||||| || ||| || | | |||| Sbjct 1077115 TGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCC- 1077057 Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483 |||| || || || |||||||| | ||||||||| || | || || |||||| Sbjct 1077056 CAGATG----CCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCC 1077001 Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 80543 | | || | || |||||| || | || || || ||||| || | ||| || Sbjct 1077000 GTCAAGCTTGAGCAGGTAAGACCGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAA 1076941 Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 80584 ||| || || || | ||| |||||| || | ||||||| Sbjct 1076940 GTCCCGGTCATAGACAATGGCCGAGTCCAGCTCCTCCTTAT 1076900 >seq9 Length=477563 Score = 111 bits (122), Expect = 2e-19 Identities = 369/565 (65%), Gaps = 22/565 (4%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||||||||||||||| | || || |||||||| || || || Sbjct 51694 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 51753 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| | ||| ||||| || | ||| || || |||| || | || |||||| Sbjct 51754 CCGGGCATCATGCCGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 51813 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGC--TGTCATG 50135 || || || || |||||||||||||| || | || || || || | | | |||| || Sbjct 51814 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGAC-GACTCCTTGTCCTG 51872 Query 50136 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| | || ||||| ||||||||||| | || || || || || ||||| | Sbjct 51873 AATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGT 51931 Query 50195 TAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCAAAAGACTA 50250 | ||||| || | | | | | || || | || || || || | || Sbjct 51932 TGAAGAGGAAG----GTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCGAG 51987 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 || | || || || ||||| || || ||||| || |||||||| || | ||||| Sbjct 51988 TAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCA 52047 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | | |||||| || | | || || || | | || || || || || |||||| Sbjct 52048 GGCACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAC 52107 Query 50371 GCTGCAAAAAACGCCAATACATGT-----TTTATAAAATGTTTTTCGTTGGGTGTTAGTT 50425 || || || || | ||| | |||| | | ||| | | || | || | | | Sbjct 52108 GCGGCGAAGAA-GGCAAGA-ATGTGCGAGATGAAGAAACGCTCGTCATCGGTTAGGCGGT 52165 Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 | ||||| |||| |||||| || || | || | || || | ||||| || || |||| Sbjct 52166 TGTTCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCT 52225 Query 50486 CTGCCTTTTTATACATATTCCAGAT 50510 | ||||| || ||||| | |||||| Sbjct 52226 CAGCCTTCTTGTACATCTGCCAGAT 52250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268539627560