Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq2 163 4e-35
seq9 111 2e-19
>seq2
Length=2210479
Score = 163 bits (180), Expect = 4e-35
Identities = 460/701 (66%), Gaps = 14/701 (2%)
Strand=Plus/Minus
Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950
|| || || |||| || ||||||| | |||||| | | | || ||||| |||||
Sbjct 1077593 CCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATG 1077534
Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010
|||||||| || ||||| ||||| | || | |||||||| | |||||| |||||
Sbjct 1077533 AAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCA 1077474
Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070
|||||| ||||| | |||| | | | || | |||||||| || | ||| |||
Sbjct 1077473 TGATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATG 1077414
Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130
|| | | || || || ||||| || ||||| || | || | |||||||| || |
Sbjct 1077413 GCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAAC 1077354
Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190
|| | | ||| || || ||||||||||| || |||||||| |||| ||||| ||
Sbjct 1077353 ACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCG 1077294
Query 80191 CTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248
| ||||| ||| | |||| ||||| || || || ||||| || ||||| | |
Sbjct 1077293 GTAGCACGGATACGGTGGACATTG--AGACCAATGCCACCAGCCATCTTGGAGATCATGG 1077236
Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308
|||| || | || |||||||| ||||| ||||| ||||| |||||| || || |
Sbjct 1077235 CGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGA 1077176
Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368
| || || | ||| | || || || || || | ||| || || || || |
Sbjct 1077175 AGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGG 1077116
Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCT-GATTCTATATCCCA 80423
| || | || |||| | ||||| ||||| || ||| || | | ||||
Sbjct 1077115 TGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCC- 1077057
Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483
|||| || || || |||||||| | ||||||||| || | || || ||||||
Sbjct 1077056 CAGATG----CCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGACAATCTTGCC 1077001
Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 80543
| | || | || |||||| || | || || || ||||| || | ||| ||
Sbjct 1077000 GTCAAGCTTGAGCAGGTAAGACCGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAA 1076941
Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 80584
||| || || || | ||| |||||| || | |||||||
Sbjct 1076940 GTCCCGGTCATAGACAATGGCCGAGTCCAGCTCCTCCTTAT 1076900
>seq9
Length=477563
Score = 111 bits (122), Expect = 2e-19
Identities = 369/565 (65%), Gaps = 22/565 (4%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| ||||| ||| ||||||||||||||| | || || |||||||| || || ||
Sbjct 51694 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 51753
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|||||||| | ||| ||||| || | ||| || || |||| || | || ||||||
Sbjct 51754 CCGGGCATCATGCCGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 51813
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGC--TGTCATG 50135
|| || || || |||||||||||||| || | || || || || | | | |||| ||
Sbjct 51814 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGAC-GACTCCTTGTCCTG 51872
Query 50136 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194
||||| | || ||||| ||||||||||| | || || || || || ||||| |
Sbjct 51873 AATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGT 51931
Query 50195 TAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCAAAAGACTA 50250
| ||||| || | | | | | || || | || || || || | ||
Sbjct 51932 TGAAGAGGAAG----GTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCGAG 51987
Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310
|| | || || || ||||| || || ||||| || |||||||| || | |||||
Sbjct 51988 TAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCA 52047
Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370
| | |||||| || | | || || || | | || || || || || ||||||
Sbjct 52048 GGCACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAC 52107
Query 50371 GCTGCAAAAAACGCCAATACATGT-----TTTATAAAATGTTTTTCGTTGGGTGTTAGTT 50425
|| || || || | ||| | |||| | | ||| | | || | || | | |
Sbjct 52108 GCGGCGAAGAA-GGCAAGA-ATGTGCGAGATGAAGAAACGCTCGTCATCGGTTAGGCGGT 52165
Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485
| ||||| |||| |||||| || || | || | || || | ||||| || || ||||
Sbjct 52166 TGTTCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCT 52225
Query 50486 CTGCCTTTTTATACATATTCCAGAT 50510
| ||||| || ||||| | ||||||
Sbjct 52226 CAGCCTTCTTGTACATCTGCCAGAT 52250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268539627560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |