Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2 156 6e-33
seq9 100 4e-16
>seq2
Length=2210479
Score = 156 bits (172), Expect = 6e-33
Identities = 284/414 (69%), Gaps = 4/414 (1%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
|| || || || || || ||||||| | |||||| | | | | ||||| |||||
Sbjct 1077593 CCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATG 1077534
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|||||||| || ||||| ||||| | || | |||||||| | |||||| |||||
Sbjct 1077533 AAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCA 1077474
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
|||||| ||||| | |||| | | | || | |||||||| || | ||| |||
Sbjct 1077473 TGATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATG 1077414
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | || || || ||||| || ||||| || | || | |||||||| || |
Sbjct 1077413 GCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAAC 1077354
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | | ||| || || ||||||||||| | |||||||| |||| ||||| ||
Sbjct 1077353 ACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCG 1077294
Query 72274 CTGGCACGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331
| ||||| ||| || |||| ||||| || || || ||||| || ||||| | |
Sbjct 1077293 GTAGCACGGATACGGTGGACATTG--AGACCAATGCCACCAGCCATCTTGGAGATCATGG 1077236
Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385
|||| || | || |||||||| ||||| || || |||||| |||||| ||
Sbjct 1077235 CGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAA 1077182
>seq9
Length=477563
Score = 100 bits (110), Expect = 4e-16
Identities = 363/562 (65%), Gaps = 16/562 (3%)
Strand=Plus/Plus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| ||||| ||| |||||||||||| || | || | |||||||| || || ||
Sbjct 51694 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 51753
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|||||||| | ||| ||||| || | ||| || || |||| || | || ||||||
Sbjct 51754 CCGGGCATCATGCCGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 51813
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCAC--TGTCATGT 42241
|| || || || || |||||||||| || | || || || || | | |||| ||
Sbjct 51814 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGA 51873
Query 42242 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300
||||| | || ||||| ||||||||||| | || || || || || ||||| ||
Sbjct 51874 ATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTT 51932
Query 42301 AAAGAGATAGtttttttCATTACTA----TCTTTAACATATGTATCGATCAAAAGACTAT 42356
||||| || | | | | | || || | || || || || | || |
Sbjct 51933 GAAGAGGAAG----GTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCGAGT 51988
Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416
| | || || || ||||| || || ||||| || |||||||| || | |||||| |
Sbjct 51989 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAG 52048
Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476
||||| || || | | || || || | | || ||||| || || |||||| |
Sbjct 52049 GCACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGACG 52108
Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTAT 42533
| || || || || | | || || || | ||||| |||| || |
Sbjct 52109 CGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGGTTAGGCGGTTGT 52168
Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593
|||| |||| |||||| || || | || | || || ||||||| || || || || |
Sbjct 52169 TCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCTCAG 52228
Query 42594 CCTTTTTATACATATTCCAGAT 42615
|||| || ||||| | ||||||
Sbjct 52229 CCTTCTTGTACATCTGCCAGAT 52250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138956712040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |