Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9 251 1e-61 seq2 183 4e-41 >seq9 Length=477563 Score = 251 bits (278), Expect = 1e-61 Identities = 571/851 (67%), Gaps = 37/851 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| ||||||| || ||||||| ||| ||| |||| ||| Sbjct 52250 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 52191 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT----AT 125134 |||||||| | | || ||| | | || | || || ||| |||| |||| || Sbjct 52190 TCCAAGGATATCCATGACTGGAACAACCGCCTAACCGA---TGA-CGAGCGTTTCTTCAT 52135 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 ||||||||| | |||||||| |||| || || || || |||||||| || ||| | Sbjct 52134 CTCGCACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGA 52075 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 || ||| ||| || | || |||| ||||| ||||| ||||| ||||| Sbjct 52074 GCGTTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCAT 52015 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| || | ||||| || ||||||| ||||| || || Sbjct 52014 GATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAGCC 51955 Query 125315 ---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 ||| || | | | ||||| ||||| || ||||| | || | || || || || Sbjct 51954 CTCGCAGCGCAC---CTTCCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAA 51898 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| | |||| || || ||||| | ||| | |||| || |||| | | | ||||| Sbjct 51897 GGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGTCGTCCTACGGCCAGCGCCTGGT 51838 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || || |||||||| |||||||||||||| ||| || || | ||||| ||| | Sbjct 51837 TGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGGAT 51778 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 |||||||||||| | |||||||| ||||| | |||||| | || || || ||||| Sbjct 51777 CAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGA 51718 Query 125552 GGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCA 125610 ||| || ||| ||||| ||| || || || || || || | || | Sbjct 51717 GGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCACCT----------CAAGCACC 51668 Query 125611 GATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | ||||| | | | |||||| | || | |||||||||||| || || || | Sbjct 51667 GCCCCAGCAAGG---ACGTCATCCAGAGAATCATCACCGATGCCGTGGCCATTGAGCAGG 51611 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| | ||||| | || || | | || | ||||||||| || || ||| Sbjct 51610 AGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAGC 51551 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 ||||||| ||||| || || || || || ||| | | | ||| || |||| | | Sbjct 51550 AGTACATCGAGTTCGTCGCCGACCGCCTGCTG---GTGGCTCTCGGCAACGACAAGGTCT 51494 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| |||| || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 51493 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACT 51434 Query 125845 TTTTCGAGAAG 125855 | || |||||| Sbjct 51433 TCTTTGAGAAG 51423 >seq2 Length=2210479 Score = 183 bits (202), Expect = 4e-41 Identities = 342/497 (69%), Gaps = 4/497 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| || || || ||||| | ||| ||||| | || || |||||||| ||| Sbjct 1077382 CAGGGCGGCAACAAGCGCCCCGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGAC 1077441 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || || || ||||||| || ||| || |||| || ||||| || Sbjct 1077442 GTGTTCGAGTTCATGGATCTGCGCAAGAATCATGGAAAGGAGGAGGTCCGCGCCAGAGAT 1077501 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| || || ||| | || ||| | ||||||||||| ||| | | | | | Sbjct 1077502 TTGTTCCTGGCTCTGTGGATCCCCGATCTCTTCATGAAGCGAGTCGAGAAGAACGCCGAG 1077561 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || |||||||| |||| |||| ||||| ||||| Sbjct 1077562 TGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGGCGAGGAGTTC 1077621 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| | |||||| ||||| || || |||| | || | || | Sbjct 1077622 GAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGTCGCAAGACCA-TCAAGGCTC- 1077679 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | |||||| | ||||||| ||||| || | || | ||| || | Sbjct 1077680 AGAAGCTGTGGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTGT 1077739 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | || ||||| |||||||| || |||| ||||| |||||| Sbjct 1077740 ACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCGCAGCTCCA 1077799 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | |||||||| || || | |||||| | |||| || ||| ||| || ||| |||| Sbjct 1077800 ACCTGTGCACAGAGATCATTGAGTACTGCGCTCCCGATGAGGTGGCTGTGTGCAACCTGG 1077859 Query 97354 CATCGGTCAATCTGCCC 97370 | || || ||||||| Sbjct 1077860 CCTCCCTCGCTCTGCCC 1077876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058931366040