Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq23 122 8e-23 >seq23 Length=4176071 Score = 122 bits (134), Expect = 8e-23 Identities = 315/460 (68%), Gaps = 29/460 (6%) Strand=Plus/Minus Query 99328 AAGTGCGTGCAGGTGACGAAGGGC--GCCCGCG-ACAGCGGCGAGGGGTGG-CTGTGCGT 99383 ||||||| || |||| |||| | | | ||| |||||||||| ||||| | | ||| Sbjct 2174572 AAGTGCGCACACGTGAAGAAGCCCTTGGCGGCGGACAGCGGCGACGGGTGCACGGCGCG- 2174514 Query 99384 CAGCACGAGGTGCCGCTTCCCGGCCGCCCCAAAGGCCCGCTGG---GCGTGCGCGCCCCA 99440 |||||||||||| ||||| || | || | | | |||| | ||| | | |||||| Sbjct 2174513 CAGCACGAGGTGGCGCTTGGCGTCGACCTTGACGACGCGCTTGCCGGCGGGGGTGCCCCA 2174454 Query 99441 GAGCATGAACACCAT--CG-GGCCGCCCTGCGCGCTCAGGCGGGCCAGCACCGCG-TGCA 99496 | ||||||||| | || || || | ||| | | || | | || ||| || Sbjct 2174453 GGCCATGAACACGACGCCGCGGGTGCGGCGGGCGGCGACGAGGTCGATGAC-GCGCTGGG 2174395 Query 99497 CCAGCCGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGCCCCGCTCCGCACGGTGAGCG 99556 | ||| ||||||| || ||||||||||| | | | | |||||||| || Sbjct 2174394 TGAAGCGCTCCCAGCCGCGGTTGGCGTGCGAGTTGGCCTCGTGGGCGCGCACGGTCAGGC 2174335 Query 99557 AGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCA-GGCCTC--CAGGCAGCCGTGCTGCG 99613 | |||||||| |||||||||||||| | ||||| ||| || ||||| | || | | || Sbjct 2174334 ACGTGTTGAGGAGCAGCACGCCGCGCTGGGCCCACGGCGTCAGCAGGCCGGCGCGGTTCG 2174275 Query 99614 GCCGCG---GGGTCCCGGGGAAGTTCTTCTGCACGGCCGC-GTAGATGTTCTGGAGGCTG 99669 || || || |||| | ||| || ||| ||| | ||| ||||| | || Sbjct 2174274 GCGGCTCGCGGAAGCCGGCGTAGTCGTTGCGCA-GGCAGATGTACATGTTGCGCAGCGAC 2174216 Query 99670 GGCGGGATCGGAA-CGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTG---CCCGTG 99725 |||||| ||| || || || ||||||||||||||| ||||| ||||| | ||| Sbjct 2174215 GGCGGGGCCGGCGTCGGCG-GGCGCACGCTGAAGGCCAGCCCGTGCGCCTGGTTCACGT- 2174158 Query 99726 GCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGACG 99765 ||||||||||||||||||| | |||||| ||||||||| Sbjct 2174157 --TGTGGTAGGGGTCCTGGCCGACGATGACCACCTTGACG 2174120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440899040174040