Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq25 107 4e-18 seq2 98.7 2e-15 >seq25 Length=4183617 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| || || | ||||| || || || |||||| Sbjct 2767477 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 2767418 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || || ||||||||||| | || Sbjct 2767417 GCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTC 2767358 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | || ||||| || || || ||||| || || || || Sbjct 2767357 ACGTTATCGATGGTATCCGACGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTC 2767298 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2767297 TTGACGAAGATCTGCAT 2767281 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| || || | ||||| || || || |||||| Sbjct 2767705 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTTCCA 2767646 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || || ||||||||||| | || Sbjct 2767645 GCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTC 2767586 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | || ||||| || || || ||||| || || || || Sbjct 2767585 ACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTC 2767526 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2767525 TTGACGAAGATCTGCAT 2767509 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || ||||| | || || || || || || ||||| ||| Sbjct 2767927 TCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAA 2767868 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || || || || || || |||||||||||||| | || || || Sbjct 2767867 ATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTG 2767808 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| | ||| || || | || || ||||| ||||| || || || || Sbjct 2767807 TCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCACG 2767748 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2767747 AAGATCTGCAT 2767737 >seq2 Length=2210479 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || |||||||| ||||| | || || || || || || ||||||||||| Sbjct 113963 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 113904 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | |||||| || || || || || || || ||||| ||||| | || || || || Sbjct 113903 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCG 113844 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | ||| || || || ||||| || || |||||||| || || || || || || || Sbjct 113843 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 113785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397972183532