Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq25 86.0 6e-12 >seq25 Length=4183617 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| || || || ||| | ||||| Sbjct 2767718 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTC 2767659 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| ||||| | ||||| | | |||||||| || || || || || ||||| | Sbjct 2767658 CAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTG 2767599 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||| ||| ||| || |||| ||||| || | |||||||| || Sbjct 2767598 AATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTCTT 2767539 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 2767538 GCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| || || || ||| | ||||| Sbjct 2767490 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTC 2767431 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| ||||| | ||||| | | |||||||| || || || || || ||||| | Sbjct 2767430 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTG 2767371 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||| ||| ||| || || | ||||| |||| |||||||| || Sbjct 2767370 AATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACCTCAAGAGTGATGGTCTT 2767311 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 2767310 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291037494440