Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq24 111 2e-20 seq25 102 1e-17 >seq24 Length=4186226 Score = 111 bits (122), Expect = 2e-20 Identities = 88/103 (85%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 497108 CGCGAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 497166 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 |||||||||| ||||||||||| || ||||||||| |||| || Sbjct 497167 TCCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCCGG 497209 >seq25 Length=4183617 Score = 102 bits (112), Expect = 1e-17 Identities = 86/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| ||| ||| || || ||||| || || ||||||||||| |||| Sbjct 1060251 CGCCAAGCGTCATCGCAAGAT-TCTCCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 1060193 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 |||| |||||||| || ||||| || ||||||||| |||| || Sbjct 1060192 TCCGCCGTCTGGCCCGCCGTGGCGGTGTCAAGCGTATCTCCGG 1060150 Score = 84.2 bits (92), Expect = 3e-12 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 16571 TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACT 16630 |||||| || || |||| ||| || || ||| ||||||||||| || || ||||| Sbjct 1060039 TTCCTCGAGGGTGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACC 1059980 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 |||||||| | ||| |||||||||| |||| || || ||||||| | || ||||| Sbjct 1059979 GTCACCTCGCTCGATGTCGTCTATGCTCTGAAGCGCCAGGGCCGTACCCTGTACGGTTTC 1059920 Query 16691 GGAAGTTAA 16699 || ||||| Sbjct 1059919 GGTGGTTAA 1059911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075173485097