Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq9 104 3e-17 >seq2 Length=2210479 Score = 150 bits (166), Expect = 2e-31 Identities = 274/399 (69%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||||| | |||||| ||| | || ||||| ||||| |||||||| || ||| Sbjct 1077578 GGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATC 1077519 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 || ||||| | || | |||||||| | ||||| ||||| |||||| ||| Sbjct 1077518 CACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGA 1077459 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 || | |||| | | | || | |||||||| || | ||| ||||| | | || || Sbjct 1077458 TCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGG 1077399 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || ||||| || | || | |||||||| || | || | | ||| || Sbjct 1077398 CGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGG 1077339 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT-- 63480 || ||||| || || | |||||||| |||| ||||| || | ||||| ||| Sbjct 1077338 ATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGG 1077279 Query 63481 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63540 | ||||| |||| || || || ||||| || ||||| | ||||| || | | Sbjct 1077278 TGGACATTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 1077221 Query 63541 TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAA 63579 |||||||||||||||| ||||| ||||| |||||| || Sbjct 1077220 TGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAA 1077182 >seq9 Length=477563 Score = 104 bits (114), Expect = 3e-17 Identities = 364/562 (65%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||||||||||||||| | || || |||||||| || || || Sbjct 51694 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGG 51753 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| | ||| ||||| || | ||| || || || | ||| | || |||||| Sbjct 51754 CCGGGCATCATGCCGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAG 51813 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGC--TGTCATGT 33480 || || || || || |||||||||| || | || || || || | | |||| || Sbjct 51814 ATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCTTGTCCTGA 51873 Query 33481 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | || ||||| ||||||||||| | || || || || || ||||| || Sbjct 51874 ATCCAGCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTT 51932 Query 33540 AAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCAAAAGACTAT 33595 ||||| || | | | | | || || | || || || || | || | Sbjct 51933 GAAGAGGAAG----GTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCGAGT 51988 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 | | || || || ||||| || || ||||| || |||||||| || | ||||| | Sbjct 51989 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAG 52048 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | ||| || || | | || || || ||| || || || || || |||||| | Sbjct 52049 GCACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGACG 52108 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTAT 33772 | || || || || | | || || || | ||||| |||| | || | Sbjct 52109 CGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGGTTAGGCGGTTGT 52168 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 |||| |||| |||||| || || | || | || || | ||||| || || ||||| | Sbjct 52169 TCCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAGGCCTCAG 52228 Query 33833 CCTTTTTATACATGTTCCAGAT 33854 |||| || ||||| | |||||| Sbjct 52229 CCTTCTTGTACATCTGCCAGAT 52250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946974181640