Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq2 91.5 1e-13
seq9 89.7 5e-13
>seq2
Length=2210479
Score = 91.5 bits (100), Expect = 1e-13
Identities = 323/497 (65%), Gaps = 21/497 (4%)
Strand=Plus/Minus
Query 148242 CCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAA 148301
|| || |||||||| || ||||| ||| ||||||| || | ||| ||||| ||| | |
Sbjct 1077653 CCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGA 1077594
Query 148302 CCGGGACACTCGTCGGGGCACATCAATGACCA-TTTCCCTCCTGTCTTTACCCTCTTCAT 148360
||||| ||||||| ||||||||||| | ||| | | | || ||| || | ||||||
Sbjct 1077593 CCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCT-TCTCGACTCGCTTCAT 1077535
Query 148361 AAACAGATCAGGTGTCCACATGGCAAAAAGAAGAT------CGCGAGCCTTCATATCCTC 148414
|| ||||| || |||||| || | | | || |||| ||| | ||||
Sbjct 1077534 GAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCC---TCCTT 1077478
Query 148415 GGCACCCATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGAT 148474
|| | |||||| ||||||| || || ||||| |||||||| |||||||
Sbjct 1077477 TCCATGATTCTTGCGC---AGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAG 1077421
Query 148475 GTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCATGCT 148531
||| | || | |||||| | | || || || || || |||| ||| || |
Sbjct 1077420 GTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTT 1077361
Query 148532 ATTAAAAACACGCAATGCA-GGTCCCAATCCCGCCGCA-GTTCCGTTTGTGGATTCAATT 148589
|| ||||||| | ||| || || || | | || || || || ||||
Sbjct 1077360 GTT--GAACACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATA 1077303
Query 148590 TTACTATTGGTGGCGCGAATTTGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAGAT 148649
| | | ||| || || || | |||||| || || ||||| || | || ||
Sbjct 1077302 TAAGAACCGGTAGCACGGATACGGTGGACATTGAGACCAATGCCACCAGCCATCTTGGAG 1077243
Query 148650 ATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGTTA 148709
|||||||| || ||||| || | |||||| || | ||| ||||| || | |||| |
Sbjct 1077242 ATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCA 1077183
Query 148710 AGCAGGTAGCACGATGA 148726
| |||| ||||||| ||
Sbjct 1077182 ACCAGGAAGCACGACGA 1077166
>seq9
Length=477563
Score = 89.7 bits (98), Expect = 5e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701
|| ||| ||||| ||||| || ||||| || || |||||||| | || || ||||| |
Sbjct 51405 CTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTC 51464
Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761
||| || ||||| || || | | ||| | |||||||| ||| | | | || |||
Sbjct 51465 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTGTCGTTGCCGAGAGCCACCAGCAG 51524
Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACAT--GGATTGCGAATTCATGCCCAACATA 119819
|| || || || ||||||||||| | ||| || | ||| |||||||||| ||
Sbjct 51525 GCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCG--TTCATGCCCAGCAGG 51582
Query 119820 GCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869
||| || | ||| | ||| | ||| |||| |||||| | || || ||
Sbjct 51583 GCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACGGCATC 51632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478662226484880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |