Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 seq9 89.7 5e-13 >seq2 Length=2210479 Score = 91.5 bits (100), Expect = 1e-13 Identities = 323/497 (65%), Gaps = 21/497 (4%) Strand=Plus/Minus Query 148242 CCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAA 148301 || || |||||||| || ||||| ||| ||||||| || | ||| ||||| ||| | | Sbjct 1077653 CCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGA 1077594 Query 148302 CCGGGACACTCGTCGGGGCACATCAATGACCA-TTTCCCTCCTGTCTTTACCCTCTTCAT 148360 ||||| ||||||| ||||||||||| | ||| | | | || ||| || | |||||| Sbjct 1077593 CCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCT-TCTCGACTCGCTTCAT 1077535 Query 148361 AAACAGATCAGGTGTCCACATGGCAAAAAGAAGAT------CGCGAGCCTTCATATCCTC 148414 || ||||| || |||||| || | | | || |||| ||| | |||| Sbjct 1077534 GAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCC---TCCTT 1077478 Query 148415 GGCACCCATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGAT 148474 || | |||||| ||||||| || || ||||| |||||||| ||||||| Sbjct 1077477 TCCATGATTCTTGCGC---AGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAG 1077421 Query 148475 GTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCATGCT 148531 ||| | || | |||||| | | || || || || || |||| ||| || | Sbjct 1077420 GTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTT 1077361 Query 148532 ATTAAAAACACGCAATGCA-GGTCCCAATCCCGCCGCA-GTTCCGTTTGTGGATTCAATT 148589 || ||||||| | ||| || || || | | || || || || |||| Sbjct 1077360 GTT--GAACACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATA 1077303 Query 148590 TTACTATTGGTGGCGCGAATTTGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAGAT 148649 | | | ||| || || || | |||||| || || ||||| || | || || Sbjct 1077302 TAAGAACCGGTAGCACGGATACGGTGGACATTGAGACCAATGCCACCAGCCATCTTGGAG 1077243 Query 148650 ATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGTTA 148709 |||||||| || ||||| || | |||||| || | ||| ||||| || | |||| | Sbjct 1077242 ATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCA 1077183 Query 148710 AGCAGGTAGCACGATGA 148726 | |||| ||||||| || Sbjct 1077182 ACCAGGAAGCACGACGA 1077166 >seq9 Length=477563 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||| ||||| ||||| || ||||| || || |||||||| | || || ||||| | Sbjct 51405 CTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTC 51464 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761 ||| || ||||| || || | | ||| | |||||||| ||| | | | || ||| Sbjct 51465 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTGTCGTTGCCGAGAGCCACCAGCAG 51524 Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACAT--GGATTGCGAATTCATGCCCAACATA 119819 || || || || ||||||||||| | ||| || | ||| |||||||||| || Sbjct 51525 GCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCG--TTCATGCCCAGCAGG 51582 Query 119820 GCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 ||| || | ||| | ||| | ||| |||| |||||| | || || || Sbjct 51583 GCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACGGCATC 51632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662226484880