Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 327 3e-84 >seq2 Length=2210479 Score = 327 bits (362), Expect = 3e-84 Identities = 1129/1736 (65%), Gaps = 36/1736 (2%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || ||||| ||||| ||| | |||||||||||| |||| ||| | | Sbjct 1077007 ATTGTCGAGCGCCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATCTGGGGAGACAAC 1077066 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT---GCTCGTGTATTCACGCACGCC 363558 || || | || || || || || ||| | || || || | ||||| || ||| Sbjct 1077067 GTCGAGCGTGTCATCGAGACCTACAA-CTTG-ATGTCCAGCAAGT-TCTTCACCCATGCC 1077123 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 | || || | | ||| ||||| || | | | ||| | || || ||||| || | Sbjct 1077124 TCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTT 1077183 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 | |||||||| || ||| |||||||||| |||||| || |||| || || | || Sbjct 1077184 GACATGAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGATC 1077243 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTA 363737 ||||||| || || || |||||| | ||||| | | ||||| || | ||| Sbjct 1077244 TCCAAGATGGCTGGTGGCATTGGTCTCAATGTCCACCGTATCCGTGCTACCGGTTC-TTA 1077302 Query 363738 CATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| ||| || || || ||||| | | ||||||||||| ||||| |||| Sbjct 1077303 TATTGCCGGAACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGCGTGTTCAACAA 1077362 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 || || | || || |||||||| || |||||| || || ||||| || || || Sbjct 1077363 CACCGCCCGCTATGTTGACCAGGGCGGCAACAAGCGCCCCGGCGCCTTTGCCATCTACCT 1077422 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGA 363917 |||||| || ||||| | || ||||| | || || || || || ||||| || Sbjct 1077423 CGAGCCGTGGCACGCCGACGTGTTCGAGTTCATGGATCTGCGCAAGAATCATGGAAAGGA 1077482 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 ||| | || || | ||| ||||| || || ||| | | || | || |||||||| Sbjct 1077483 GGAGGTCCGCGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCCGATCTCTTCATGAAGCG 1077542 Query 363978 CGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 || ||| | | | | | ||| | || | ||||| |||| || || |||||| || Sbjct 1077543 AGTCGAG--AAGAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCC 1077600 Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 || | || || || | | || || ||||| ||||| || | ||||| | | Sbjct 1077601 GACTGCTACGGCGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGT 1077660 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 || ||||| || || |||||||| |||| |||||| | || | |||| ||||| Sbjct 1077661 CGCAAGACCATCAAGGCTCAGAAGCTGTGGTACGCCATCCTCGAGGCTCAGACCGAGACC 1077720 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || | |||| ||| ||||||| || |||||||||||| ||||||| || |||| Sbjct 1077721 GGCAACCCCTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTG 1077780 Query 364216 GGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 ||||| |||| |||| |||||| || || ||||| ||||| ||| ||||||||| || Sbjct 1077781 GGTACCATTC-GCAGCTCCAACCTGTGCACAGAGATCATTGAGTACTGCGCTCCCGATGA 1077839 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT---TTG--TAAAAGATGGT 364329 | || || || ||||| || || |||| || || || | ||| || || | || Sbjct 1077840 GGTGGCTGTGTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTACGTTGACTACAACAAGGG 1077899 Query 364330 ACT-TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACT-TGCAATCTCGACA 364387 | | |||| || | || | || || ||| || || | | |||| || || Sbjct 1077900 CGTGTATGACTTTGAGAAGCTGCACGAGGTCACC-ATGGTGGTTGTCCGCAACCTGAACC 1077958 Query 364388 AGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCG 364442 | || || || | || || | || || || || ||| || ||||| Sbjct 1077959 GCATCATTGATGTCAACCACTACCCCGTGCCCGAGGCTCGCAACAGC-----AACATGCG 1078013 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT 364502 || ||||| || ||| ||||||| ||||| || || || | ||| | || || Sbjct 1078014 CCACCGCCCCATCGGTGTTGGTGTTCAGGGTCTTGCCGATGCTTTCCTCGCTCTGCGCAT 1078073 Query 364503 GGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 | | ||||| || | || ||||| | || || || ||||||| || || || || Sbjct 1078074 GCCCTTTGAGTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGACCATCTACCA 1078133 Query 364563 TGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 || || || | || ||| || | || || |||||| ||||| || ||||| Sbjct 1078134 CGCTGCTCTGTCGGCCTCGGTGGAGATCGCCAAGGAGGAGGGAACCTACTCCACCTATGA 1078193 Query 364623 GGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGT 364682 ||| || || | || ||||| | | |||||||| | |||||||||| ||| | | Sbjct 1078194 GGGCTCTCCCGTCTCTCAGGGTATCCTGCAGTTTGACATGTGGAATGTCAAGCCCACCGA 1078253 Query 364683 CCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCC 364741 || ||| ||||||||| || | | | | | ||| || ||| ||||||| | Sbjct 1078254 CCTCTGGGACTGGGATAGCCTGAAGGAGC-AGATCAAGCTTCACGGTGTTCGCAACAGTC 1078312 Query 364742 TCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCT 364801 | | || ||||||||||| || ||| | ||||| || || ||||||||||||| Sbjct 1078313 TGCTGCTGGCTCCCATGCCCACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGCT 1078372 Query 364802 TCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAG 364861 | || |||| || |||| | || ||||| || ||| | ||||| || | ||| | Sbjct 1078373 TTGAGCCGTACACCTCCAATATCTACCAGCGCCGTGTGCTTGCTGGAGAGTTCCAGGTGG 1078432 Query 364862 TTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGA 364921 | || || | || ||||| ||||| || |||||| ||| ||||||| Sbjct 1078433 TCAACCCGTGGTTGCTCCGCGATCTAGTCGACCTTGGCCTGTGGTCGGACTCGATGAAGA 1078492 Query 364922 ACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT-CCAGGATTTCCAGAAGATCTG 364980 || ||||| |||| || || || | ||||||||| |||| | | || | || | Sbjct 1078493 ACCGCATCATTGCCGACAACGGCTCGATCCAGAACATTGCCAGCA-TCCCTGCTGACATC 1078551 Query 364981 AAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCC 365040 ||| || | ||||| || || |||||||||||| ||| ||| || | | ||||| ||| Sbjct 1078552 AAGGCTCTGTACAAGACGGTCTGGGAAATTTCCCAGCGCACTGTCGTGCAGATGGCTGCC 1078611 Query 365041 GATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACC 365100 ||||| |||||||| || ||| ||||| | ||| | ||||| | || || Sbjct 1078612 GATCGTGGTGCTTTCATTGACCAGTCGCAGTCTCTGAACATCCACATGAAGGACCCCACG 1078671 Query 365101 TCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| | || |||||| ||| ||| ||||| ||||| ||||| || Sbjct 1078672 ATGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTTGGTCTCAAGACCGG 1078727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353115722678