Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_007653.1 Length=156487 Score E Sequences producing significant alignments: (Bits) Value seq23 107 2e-18 >seq23 Length=4176071 Score = 107 bits (118), Expect = 2e-18 Identities = 321/476 (67%), Gaps = 41/476 (9%) Strand=Plus/Plus Query 11408 GTCGTCATCATCGGTCAGGACCCCTATCACCAGCCCGGCCAGGCCCACGGCCTCGCGTTC 11467 || |||||| |||| ||||||||||| ||| | |||||| ||||| || || ||| Sbjct 2174127 GTGGTCATCGTCGGCCAGGACCCCTACCACAACGTGAACCAGGCGCACGGGCTGGCCTTC 2174186 Query 11468 AGCGTCAGACCCGGC-ACCCCCGCCCCGCCCAGCCTGCGCAACAT---CCTGGCCGCGGT 11523 ||||| | |||| | || || |||||||| ||||||||||| | | | || | Sbjct 2174187 AGCGTGCG-CCCGCCGACGCCGGCCCCGCCGTCGCTGCGCAACATGTACAT--CTGCC-T 2174242 Query 11524 CCGCAACTGCTGC-CCGGAT---GCGA--CGATGAGCGGC-CAGGGGTGCCTGGAAAAGT 11576 |||||| || | |||| | |||| || || | || | || ||| || || Sbjct 2174243 GCGCAACGACTACGCCGGCTTCCGCGAGCCGCCGAACCGCGCCGGCCTGC-TGACGCCGT 2174301 Query 11577 GGGCCCGCGGGGGCGTCCTGCTCCTCAACACCACCCTGACGGTCCGCCGCGGAGAGCCCG 11636 |||||| | ||||| |||||||||||||| |||||| || ||| | ||| || Sbjct 2174302 GGGCCCAGCGCGGCGTGCTGCTCCTCAACACGTGCCTGACCGTGCGCGCCCACGAGGCCA 2174361 Query 11637 CCTCGCACGCCAAGATCGGCTGGGATCGCTTCGTCGCCAGCGTC-----CTTCGTCGCCT 11691 |||||||||||| ||||||||| |||||| | ||||| | |||||||| Sbjct 2174362 ACTCGCACGCCAACCGCGGCTGGGAGCGCTTCACCCAGCGCGTCATCGACCTCGTCGCCG 2174421 Query 11692 CGCCGCCTCGCGCCCCGGGTTGGTGTTTATGCTCTGGGGCGCCCACGCC--CAGAGCGCG 11749 | ||||| | | || ||| | ||||| ||| ||||||| ||| |||| || |||||| Sbjct 2174422 C-CCGCCGCAC-CCGCGGCGTCGTGTTCATGGCCTGGGGCACCCCCGCCGGCA-AGCGCG 2174478 Query 11750 --ATCCGCCCCGAC-CCCCGCGTGCACCGCGTCCTCACCTACTCGCACCCGTCGCCGCTC 11806 || |||| || ||| |||| ||| || | | ||||||||||||||| Sbjct 2174479 TCGTCAAGGTCGACGCCAAGCG-CCACCTCGTGCTGCGCGCCGTGCACCCGTCGCCGCTG 2174537 Query 11807 TCC-------AGGGTTCCCTTCGGTTCCTGTCGCCATTTCTGCCTCGCGAACCAGT 11855 ||| |||| |||| | ||| || ||| ||||||||||||||| Sbjct 2174538 TCCGCCGCCAAGGG----CTTCTTCACGTGTGCGCACTTCCGCCTCGCGAACCAGT 2174589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500630218521480