Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq2 161 9e-35
seq9 145 7e-30
seq25 123 2e-23
seq23 105 6e-18
>seq2
Length=2210479
Score = 161 bits (178), Expect = 9e-35
Identities = 1000/1584 (63%), Gaps = 35/1584 (2%)
Strand=Plus/Minus
Query 144914 ATTTCCCAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGA 144973
|||||||| | |||||||||| | || |||| | || |||| | |||| |||
Sbjct 1078580 ATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGCTGGCAATGTTCTGG 1078521
Query 144974 ATCGACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTG 145033
||||| || |||| |||| ||| |||| ||| | || |||| | | |
Sbjct 1078520 ATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAGGCCAAGGTCG 1078461
Query 145034 ATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGC 145093
| | ||| | || || | ||||| ||||| ||||| || || | |||||| |||
Sbjct 1078460 ACTAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGC 1078401
Query 145094 AAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTC 145153
|| | || || ||| | || ||||| ||||||| ||||| || || || | |||
Sbjct 1078400 TGGTAGATATTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTA 1078341
Query 145154 GTTGCGGTGGGCATGTACGCCACCA--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGT 145211
| || ||||||||| |||| || | | || ||||| | ||||| |||||| |
Sbjct 1078340 CTGGCAGTGGGCATGGGAGCCAGCAGCAGACTG--TTGCGAACACCGTGAAGCTTGATCT 1078283
Query 145212 CTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACT 145271
||||| || || |||| ||||| || || ||| | || | ||||||||| |||
Sbjct 1078282 GCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACT 1078223
Query 145272 GCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGG 145331
||| || |||| | |||| ||| | | ||| ||| | ||| ||||
Sbjct 1078222 GCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGG 1078163
Query 145332 CGAGCTCGCAACTCG-CCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTG 145390
||| ||| || | | || |||||| || || || |||||| || ||| |||
Sbjct 1078162 CGATCTC-CACCGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTC 1078104
Query 145391 AGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGC 145450
||| | || || || ||| | ||||||||||| | ||||||||||| ||
Sbjct 1078103 AGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGA 1078044
Query 145451 CCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG--- 145507
||||| | || || |||||||| || || ||||||||| | | || ||||
Sbjct 1078043 CCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC---CTCGGGC 1077987
Query 145508 ATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATG 145567
| || || | || || || || |||| ||| || || || ||| | || |
Sbjct 1077986 ACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACC 1077927
Query 145568 TGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCG 145627
| ||| ||| ||||||||| || ||| || | | || || | |||
Sbjct 1077926 TCGTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCG 1077867
Query 145628 ATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCG 145687
| || |||| || || || ||| ||| |||| ||| ||| | | |||||| | |
Sbjct 1077866 AGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTG 1077807
Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747
|||| ||| | ||||| ||||| || | ||| || || || | |||||| |
Sbjct 1077806 CACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGG 1077747
Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGC 145807
|||||||| |||||| | || ||| ||||| ||| | ||| | ||| || |
Sbjct 1077746 TCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAT--GGCGTACC 1077689
Query 145808 A-AG-TCCTGCGCACGCACCTGCTGCTGGTA--GCGGCCCTCTTCTTCGTATTTCCTGTA 145863
| || | ||| || | || | || | ||| ||||| | ||||| ||| |||
Sbjct 1077688 ACAGCTTCTGAGCCTTGA--TGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTA 1077631
Query 145864 GAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACAT 145923
|| |||| ||| | |||||||| |||| || ||||| |||| |||||| |||||
Sbjct 1077630 CAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACAT 1077571
Query 145924 CAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGC 145983
||| | ||| || |||| | ||| |||| ||| || | ||| || | |||||| ||
Sbjct 1077570 CAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGC 1077511
Query 145984 GTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAG 146040
| ||| || | || | ||||| ||||| ||| || || || | |
Sbjct 1077510 CAGGAACAAATCTCTGGCGCGGACCTCCTC-CTTTCCATGATTCTTGC-GCAGATCCATG 1077453
Query 146041 CACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG--- 146097
|| | | | | ||| ||||||||||| || | |||| ||| | ||| || ||
Sbjct 1077452 AACTCGA-ACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTT 1077394
Query 146098 TTTGCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGAC 146157
||||| |||||||| || | || | ||||||| || ||||| | |||||| ||
Sbjct 1077393 GTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGAT 1077334
Query 146158 GCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAAC 146217
|| ||| ||| || || | || | ||| | || | | || ||
Sbjct 1077333 ACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGAC 1077274
Query 146218 ATTCACGCCGAGACCGCC-GCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGT 146276
||| | || | || || ||| | |||||| || ||||||| ||| || || |
Sbjct 1077273 ATTGAGACCAATGCCACCAGCCAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCAT 1077215
Query 146277 AGATGCCGTCAATGCTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGC 146334
|||| || |||||||| || |||| ||| | | ||| |||||||| | | ||| ||
Sbjct 1077214 AGATACCCTCAATGCTGTCATCCTTC--ATGTCAACCAGGAAGCACGACGAGAGCTGGGC 1077157
Query 146335 CATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCAT 146394
| ||| || || || ||| | || ||| || || || || | || | | |||
Sbjct 1077156 CTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACAT 1077097
Query 146395 CATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCG 146454
|| || || ||||| | | | || ||| || ||||| | ||| || ||
Sbjct 1077096 CAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCCCAGATGCCAACAGCAACACG 1077037
Query 146455 CATGAGCATGTGTTGGGGCCGCTC 146478
||||| |||||| ||||| |||||
Sbjct 1077036 CATGATCATGTGCTGGGGGCGCTC 1077013
>seq9
Length=477563
Score = 145 bits (160), Expect = 7e-30
Identities = 351/519 (68%), Gaps = 17/519 (3%)
Strand=Plus/Minus
Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGAT-CAACAGCAGCACCGC 46142
|| || ||| | |||||||| |||||||||| || ||||| || | || | |
Sbjct 51917 ATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGT-C 51859
Query 46143 GACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAG 46202
| | | || | |||| |||| |||||||| || |||||| |||| || ||
Sbjct 51858 GTCCTACGGCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGC 51799
Query 46203 TTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262
|| | | ||||| | ||||| | ||||| |||||||||||||| || |||
Sbjct 51798 CTTCTCGTCGATCTTCTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAA 51739
Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACA 46321
||||||||| ||||| |||||||| ||||| || ||||| || || || || | | ||
Sbjct 51738 CGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCA 51679
Query 46322 CTCGCGTGCAC--GACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGT 46379
| | | |||| | ||| | ||| | | | ||| || ||| || || ||
Sbjct 51678 C-CTCAAGCACCGCCCCAGCAAG-----GACGTCATCCAGAGAATCATCACCGATGCCGT 51625
Query 46380 GGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACG- 46438
|||||||||| ||||||| | || | || |||||| |||||||||||||||||||
Sbjct 51624 GGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGC 51565
Query 46439 CACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCAC 46497
||| | ||| | ||||||||||| || || ||||| ||||| ||| ||| ||
Sbjct 51564 CACCCT-GATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTG--GCTCTCGG 51508
Query 46498 CAGC-CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556
|| | ||| | | || ||| || || || || ||| | |||||||| ||||
Sbjct 51507 CAACGACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGG 51448
Query 46557 GGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
||||| || || || || || ||||| || ||||| ||
Sbjct 51447 CGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTA 51409
>seq25
Length=4183617
Score = 123 bits (136), Expect = 2e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | ||| || || | ||| | ||| |||||||| || |||||||| |||
Sbjct 2767279 CCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2767220
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||| || |||| | ||||| ||||||||||||
Sbjct 2767219 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGG 2767160
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||||| | || | |||||| | |||||||
Sbjct 2767159 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATAGTATCCGAAGACTCGACC 2767100
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| ||| | ||| || |||||
Sbjct 2767099 TCGAGGGTGATGGTCTTTCCGGT 2767077
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||||||||||| || || || | || | || |||||| || |||||||| |||
Sbjct 2767964 GCCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 2767905
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| ||||| ||||||||||| ||| | || | |||||||||||||| ||
Sbjct 2767904 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 2767845
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || || || || ||| ||| | | || | ||||| | || || |
Sbjct 2767844 GATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCAC 2767785
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | || || || || ||||| || ||||| ||||||||
Sbjct 2767784 TTCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
>seq23
Length=4176071
Score = 105 bits (116), Expect = 6e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | |||||| ||||| ||||||||||| || |||
Sbjct 893473 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 893532
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | ||||| |||||||| || || || || ||||| ||| ||| ||||| | |
Sbjct 893533 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 893592
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | |||||| | |||||| | || | ||| | || || || || || || || ||||
Sbjct 893593 CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGA 893652
Query 131225 AAATCTGCATG 131235
|||||||||||
Sbjct 893653 AAATCTGCATG 893663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012628895360
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