Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 161 9e-35 seq9 145 7e-30 seq25 123 2e-23 seq23 105 6e-18 >seq2 Length=2210479 Score = 161 bits (178), Expect = 9e-35 Identities = 1000/1584 (63%), Gaps = 35/1584 (2%) Strand=Plus/Minus Query 144914 ATTTCCCAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGA 144973 |||||||| | |||||||||| | || |||| | || |||| | |||| ||| Sbjct 1078580 ATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGCTGGCAATGTTCTGG 1078521 Query 144974 ATCGACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTG 145033 ||||| || |||| |||| ||| |||| ||| | || |||| | | | Sbjct 1078520 ATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAGGCCAAGGTCG 1078461 Query 145034 ATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGC 145093 | | ||| | || || | ||||| ||||| ||||| || || | |||||| ||| Sbjct 1078460 ACTAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGC 1078401 Query 145094 AAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTC 145153 || | || || ||| | || ||||| ||||||| ||||| || || || | ||| Sbjct 1078400 TGGTAGATATTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTA 1078341 Query 145154 GTTGCGGTGGGCATGTACGCCACCA--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGT 145211 | || ||||||||| |||| || | | || ||||| | ||||| |||||| | Sbjct 1078340 CTGGCAGTGGGCATGGGAGCCAGCAGCAGACTG--TTGCGAACACCGTGAAGCTTGATCT 1078283 Query 145212 CTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACT 145271 ||||| || || |||| ||||| || || ||| | || | ||||||||| ||| Sbjct 1078282 GCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACT 1078223 Query 145272 GCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGG 145331 ||| || |||| | |||| ||| | | ||| ||| | ||| |||| Sbjct 1078222 GCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGG 1078163 Query 145332 CGAGCTCGCAACTCG-CCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTG 145390 ||| ||| || | | || |||||| || || || |||||| || ||| ||| Sbjct 1078162 CGATCTC-CACCGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTC 1078104 Query 145391 AGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGC 145450 ||| | || || || ||| | ||||||||||| | ||||||||||| || Sbjct 1078103 AGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGA 1078044 Query 145451 CCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG--- 145507 ||||| | || || |||||||| || || ||||||||| | | || |||| Sbjct 1078043 CCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC---CTCGGGC 1077987 Query 145508 ATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATG 145567 | || || | || || || || |||| ||| || || || ||| | || | Sbjct 1077986 ACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACC 1077927 Query 145568 TGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCG 145627 | ||| ||| ||||||||| || ||| || | | || || | ||| Sbjct 1077926 TCGTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCG 1077867 Query 145628 ATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCG 145687 | || |||| || || || ||| ||| |||| ||| ||| | | |||||| | | Sbjct 1077866 AGGGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTG 1077807 Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| ||| | ||||| ||||| || | ||| || || || | |||||| | Sbjct 1077806 CACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGG 1077747 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGC 145807 |||||||| |||||| | || ||| ||||| ||| | ||| | ||| || | Sbjct 1077746 TCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAT--GGCGTACC 1077689 Query 145808 A-AG-TCCTGCGCACGCACCTGCTGCTGGTA--GCGGCCCTCTTCTTCGTATTTCCTGTA 145863 | || | ||| || | || | || | ||| ||||| | ||||| ||| ||| Sbjct 1077688 ACAGCTTCTGAGCCTTGA--TGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTA 1077631 Query 145864 GAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACAT 145923 || |||| ||| | |||||||| |||| || ||||| |||| |||||| ||||| Sbjct 1077630 CAGGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACAT 1077571 Query 145924 CAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGC 145983 ||| | ||| || |||| | ||| |||| ||| || | ||| || | |||||| || Sbjct 1077570 CAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGC 1077511 Query 145984 GTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAG 146040 | ||| || | || | ||||| ||||| ||| || || || | | Sbjct 1077510 CAGGAACAAATCTCTGGCGCGGACCTCCTC-CTTTCCATGATTCTTGC-GCAGATCCATG 1077453 Query 146041 CACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG--- 146097 || | | | | ||| ||||||||||| || | |||| ||| | ||| || || Sbjct 1077452 AACTCGA-ACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTT 1077394 Query 146098 TTTGCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGAC 146157 ||||| |||||||| || | || | ||||||| || ||||| | |||||| || Sbjct 1077393 GTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGAT 1077334 Query 146158 GCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAAC 146217 || ||| ||| || || | || | ||| | || | | || || Sbjct 1077333 ACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGAC 1077274 Query 146218 ATTCACGCCGAGACCGCC-GCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGT 146276 ||| | || | || || ||| | |||||| || ||||||| ||| || || | Sbjct 1077273 ATTGAGACCAATGCCACCAGCCAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCAT 1077215 Query 146277 AGATGCCGTCAATGCTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGC 146334 |||| || |||||||| || |||| ||| | | ||| |||||||| | | ||| || Sbjct 1077214 AGATACCCTCAATGCTGTCATCCTTC--ATGTCAACCAGGAAGCACGACGAGAGCTGGGC 1077157 Query 146335 CATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCAT 146394 | ||| || || || ||| | || ||| || || || || | || | | ||| Sbjct 1077156 CTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACAT 1077097 Query 146395 CATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCG 146454 || || || ||||| | | | || ||| || ||||| | ||| || || Sbjct 1077096 CAAGTTGTAGGTCTCGATGACACGCTCGACGTTGTCTCCCCAGATGCCAACAGCAACACG 1077037 Query 146455 CATGAGCATGTGTTGGGGCCGCTC 146478 ||||| |||||| ||||| ||||| Sbjct 1077036 CATGATCATGTGCTGGGGGCGCTC 1077013 >seq9 Length=477563 Score = 145 bits (160), Expect = 7e-30 Identities = 351/519 (68%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGAT-CAACAGCAGCACCGC 46142 || || ||| | |||||||| |||||||||| || ||||| || | || | | Sbjct 51917 ATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGT-C 51859 Query 46143 GACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAG 46202 | | | || | |||| |||| |||||||| || |||||| |||| || || Sbjct 51858 GTCCTACGGCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGC 51799 Query 46203 TTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || | | ||||| | ||||| | ||||| |||||||||||||| || ||| Sbjct 51798 CTTCTCGTCGATCTTCTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAA 51739 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACA 46321 ||||||||| ||||| |||||||| ||||| || ||||| || || || || | | || Sbjct 51738 CGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCA 51679 Query 46322 CTCGCGTGCAC--GACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGT 46379 | | | |||| | ||| | ||| | | | ||| || ||| || || || Sbjct 51678 C-CTCAAGCACCGCCCCAGCAAG-----GACGTCATCCAGAGAATCATCACCGATGCCGT 51625 Query 46380 GGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACG- 46438 |||||||||| ||||||| | || | || |||||| ||||||||||||||||||| Sbjct 51624 GGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGC 51565 Query 46439 CACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCAC 46497 ||| | ||| | ||||||||||| || || ||||| ||||| ||| ||| || Sbjct 51564 CACCCT-GATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTG--GCTCTCGG 51508 Query 46498 CAGC-CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556 || | ||| | | || ||| || || || || ||| | |||||||| |||| Sbjct 51507 CAACGACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGG 51448 Query 46557 GGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||| || || || || || ||||| || ||||| || Sbjct 51447 CGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTA 51409 >seq25 Length=4183617 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| || || | ||| | ||| |||||||| || |||||||| ||| Sbjct 2767279 CCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2767220 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | ||||| |||||||||||| Sbjct 2767219 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGG 2767160 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | |||||| | ||||||| Sbjct 2767159 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATAGTATCCGAAGACTCGACC 2767100 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 2767099 TCGAGGGTGATGGTCTTTCCGGT 2767077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || || || | || | || |||||| || |||||||| ||| Sbjct 2767964 GCCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 2767905 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| ||||||||||| ||| | || | |||||||||||||| || Sbjct 2767904 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 2767845 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || || ||| ||| | | || | ||||| | || || | Sbjct 2767844 GATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCAC 2767785 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 2767784 TTCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737 >seq23 Length=4176071 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| ||||| ||||||||||| || ||| Sbjct 893473 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 893532 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||| |||||||| || || || || ||||| ||| ||| ||||| | | Sbjct 893533 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 893592 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | |||||| | |||||| | || | ||| | || || || || || || || |||| Sbjct 893593 CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGA 893652 Query 131225 AAATCTGCATG 131235 ||||||||||| Sbjct 893653 AAATCTGCATG 893663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012628895360