Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq25 98.7 8e-16
seq23 82.4 6e-11
>seq25
Length=4183617
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || |||| || || ||||||||||| || ||||||||||| | |
Sbjct 2767735 CCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767676
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||||| || || || || | || || ||||| || ||| ||
Sbjct 2767675 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767616
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| ||| | | |||||| | | | || || | |||
Sbjct 2767615 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACC 2767556
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||||| || |||||||| || ||||| || ||||||||
Sbjct 2767555 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
Score = 87.8 bits (96), Expect = 1e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || || |||||||| || ||||||||||||| | ||| | |||||
Sbjct 2767264 AGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 2767205
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || ||||| ||| | || || |||||||||||| ||| | |||||| |||||
Sbjct 2767204 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCC 2767145
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | | ||| || | | | | ||| || | ||| || | |||||||||
Sbjct 2767144 TGGATCTTCGACTTGACATTGTCGATAGTATCCGAAGACTCGACCTCGAGGGTGATGGTC 2767085
Query 16904 TTTCCGGT 16911
||||||||
Sbjct 2767084 TTTCCGGT 2767077
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||| |||||| || ||||||||||||| | || | | |||
Sbjct 2767948 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 2767889
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || ||||| || |||| || ||||| |||||| || | |||||| || ||
Sbjct 2767888 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 2767829
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | | |||||| | | | | || || | ||| ||||| |||||| ||
Sbjct 2767828 TGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTC 2767769
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| ||||| || || || || ||||||||
Sbjct 2767768 TTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
>seq23
Length=4176071
Score = 82.4 bits (90), Expect = 6e-11
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 16746 CCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAA 16805
|||| || ||||||||||||| | ||| | | ||||| | || ||||| ||| | |
Sbjct 893473 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 893532
Query 16806 TAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGC 16865
| || |||||||||||| || | |||||| ||||| || | | ||| || | |
Sbjct 893533 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 893592
Query 16866 CCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAA 16925
| | ||| || || |||| || | |||||| || || || || || || || || |
Sbjct 893593 CGATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGA 893652
Query 16926 AAATCTGCAT 16935
||||||||||
Sbjct 893653 AAATCTGCAT 893662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405087856826710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |