Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 152 7e-32 >seq2 Length=2210479 Score = 152 bits (168), Expect = 7e-32 Identities = 285/417 (68%), Gaps = 4/417 (1%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||||| | |||||| ||| | || ||||| ||| Sbjct 1077596 AGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTCTCGACTCGCTTC 1077537 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| || ||||| ||||| | || | |||||||| | ||||| ||| Sbjct 1077536 ATGAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGGACCTCCTCCTTT 1077477 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || |||||| ||||| | |||| | | | || | |||||||| || | ||| Sbjct 1077476 CCATGATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAG 1077417 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | || || || ||||| || ||||| || | || | |||||||| || Sbjct 1077416 ATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCGGGCGGTGTTGTTG 1077357 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| || || ||||||||||| || |||||||| || | ||||| Sbjct 1077356 AACACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCGGCAATATAAGAA 1077297 Query 63320 CCACTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || | ||||| ||| | |||| ||||| || || || ||||| || ||||| | Sbjct 1077296 CCGGTAGCACGGATACGGTGGACATTG--AGACCAATGCCACCAGCCATCTTGGAGATCA 1077239 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 63434 ||||| || | || |||||||| ||||| || || |||||| |||||| || Sbjct 1077238 TGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCAA 1077182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631770308400