Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 89.7 4e-13
seq25 87.8 2e-12
seq23 82.4 7e-11
>seq2
Length=2210479
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || |||||| | ||||| || | ||||| | || |||||||| || ||||| |||
Sbjct 113785 TTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCATC 113844
Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127
|| | ||| || ||| ||||| || || ||||| || ||||||||||| ||
Sbjct 113845 GACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCTT 113904
Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186
|||||||| ||||| || | || |||| || ||| || || ||||| || || ||
Sbjct 113905 ATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 113963
>seq25
Length=4183617
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || ||||||| | || || |||||||||
Sbjct 2767509 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGTCGTCT 2767568
Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| | || ||||| | || | ||| ||||| || || || || || || |
Sbjct 2767569 GATACCATCGA-TAACGTGAAGTCGAAGATTCA-GGACAAGGAGGGCATCCCCCCGGATC 2767626
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || || || || || || | || || | ||||| || || ||||
Sbjct 2767627 AGCAGCGTCTCATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACA 2767686
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || || ||||| || || || |||||
Sbjct 2767687 ACATCCAGAAGGAGTCCACCCTTCACTTGGTGCT 2767720
>seq23
Length=4176071
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052
|| || ||||| || || || ||||| | || || || | ||||| | || ||||||
Sbjct 893668 GGCACCATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAG 893609
Query 25053 TCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110
|| || || |||||||| || || ||| || ||| ||||| || || ||||| |
Sbjct 893608 TCCTCGGATACTATCGA--CAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCC 893551
Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170
| ||||||||||| | || ||||| ||||| || | || |||| ||||| | ||
Sbjct 893550 CGGACCAACAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCG 893491
Query 25171 ATTACAATATTCAAAA 25186
| ||||| || || ||
Sbjct 893490 ACTACAACATCCAGAA 893475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327846845635
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |