Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq23 118 9e-22
seq25 102 7e-17
seq2 102 7e-17
>seq23
Length=4176071
Score = 118 bits (130), Expect = 9e-22
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | || || || || |||| ||||| ||||| || |
Sbjct 893662 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCG 893603
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| || |||| || || || ||||||||||| ||||| || || |||
Sbjct 893602 GATACTATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 893543
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| ||||| ||| | |||||| ||||||| | ||||| ||||||
Sbjct 893542 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAAC 893483
Query 22399 ATTCAAAA 22406
|| || ||
Sbjct 893482 ATCCAGAA 893475
>seq25
Length=4183617
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||||||||| || || | |
Sbjct 2767281 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGTCG 2767340
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | || || ||||| ||||||||||| || || || |||||
Sbjct 2767341 GATACCATCGATAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 2767400
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || || ||| | ||||| ||||||| | || || ||||||
Sbjct 2767401 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAAC 2767460
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| || || || |||||| | || || ||
Sbjct 2767461 ATCCAGAAGGAGTCCACCCTTCACTTGGT 2767489
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || || || || | | ||||| | ||| || ||||
Sbjct 2767077 ACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACTATCGACAATGTCAAGTCG 2767136
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || || || ||||| || || || ||||| |||||
Sbjct 2767137 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAACAGCGCCTGATCTTTGCTGGCAAG 2767196
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| ||| ||| ||||||| |||||||| || || || || ||| | |||
Sbjct 2767197 CAGCTTGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAT 2767256
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || | || | ||||| |||
Sbjct 2767257 CTCGTCCTCCGTCTCCGCGGCGGT 2767280
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || ||||||| || || || | |
Sbjct 2767509 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGTCGTCT 2767568
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | || || ||||| ||||||||||| || || || |||||
Sbjct 2767569 GATACCATCGATAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 2767628
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || || ||| | ||||| ||||||| | || || ||||||
Sbjct 2767629 CAGCGTCTCATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACAAC 2767688
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| || || || |||||| | || || ||
Sbjct 2767689 ATCCAGAAGGAGTCCACCCTTCACTTGGT 2767717
>seq2
Length=2210479
Score = 102 bits (112), Expect = 7e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287
|| || || ||| | ||||| || || |||| ||||| ||||| | | || ||| |
Sbjct 113785 TTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCGGACACCATC 113844
Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347
||| | |||| || || || ||||||||||| ||||| || || ||||| ||||||
Sbjct 113845 GACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTCTT 113904
Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| ||||| ||||| ||| | |||||| ||| || | || || |||||||| || ||
Sbjct 113905 ATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCTGACTACAACATCCAGAA 113963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727851652385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |