Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq25 129 1e-24
seq2 116 8e-21
seq26 102 2e-16
seq9 100 6e-16
seq27 86.0 1e-11
seq23 86.0 1e-11
>seq25
Length=4183617
Score = 129 bits (142), Expect = 1e-24
Identities = 439/675 (65%), Gaps = 23/675 (3%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || ||||| ||||| |||||||||||||| ||||| | |||||||| || |
Sbjct 21449 GTCGGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCCCTGGCCCGCGCCATGCTGCAA 21508
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
||||| || || ||||| || || || ||||||||| ||||| | |||||||
Sbjct 21509 AAGGCCGACGTGCTGCTGCTCGACGAACCTACCAACCACTTGGACGTCGCCAACGTTAAG 21568
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875
||||| | | |||||| ||||| | | || | | || || || || ||||||
Sbjct 21569 TGGCTGGAGGGCTACCTGACCAGCCACCCGGATATCACCAGTCTGATCGTGTCCCACGAC 21628
Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935
|| |||||||| || ||||| | | | |||| ||||| |||| || ||||||
Sbjct 21629 TCCGGCTTCCTCGACGCCGTCACCACCGACATCTACCACTACGAGCCCAACAAGAAGCTA 21688
Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCCGCCT 279993
|| | || |||||||||| | || ||||| ||| ||| || ||||| ||
Sbjct 21689 GCCGTGTACCGCGGCAACCTGGCCGCCTTCGT--CAAGGTGCGGCCCGAGGCCAAGAGCT 21746
Query 279994 ACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053
|||| ||| | | ||| || ||| ||||| ||| || | ||| |
Sbjct 21747 ACTACACACTGTCTGCCTCCAACGTGCAGTTCCGCTTCCCGCCGCCCGGCATCCTGACCG 21806
Query 280054 GCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111
|| ||| || || ||||| |||| | | || ||| || | | || ||
Sbjct 21807 GCGTCAAGTCCAATACGCGCGCCGTCATCCGCATGACC--AACGTGTCGTACACCTACCC 21864
Query 280112 CAATGGCCCCAA--CATC-TTCAGC--AGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166
||||| |||||| | || ||||| ||||| | ||| | || | || ||
Sbjct 21865 CAATGCCCCCAAGCCGTCGCTCAGCGACGTGTC--GTGCCAGCTGTCGCTATCGTCGCGC 21922
Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226
| | |||| |||||||| ||||| || ||||| ||||| ||||| | ||||| |||
Sbjct 21923 GTGGCCATCATCGGACCCAACGGTGCCGGCAAGTCGACCCTGATCAAGCTGCTGACCGGC 21982
Query 280227 GAGA----CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTA 280282
|||| ||| || | || ||| |||||| |||||| |||| || | ||
Sbjct 21983 GAGATGATCCCCAGCTCC----GGCCGCGTCGAGAAGCACCCCAACCTGCGTATCGGCTA 22038
Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342
| || |||||||| | | ||| | || | ||||| || | ||| || || || ||
Sbjct 22039 CATCAAGCAGCACGCCCTAGAGCACGTAGAAATGCACCTAGAGAAGACCCCCAATCAGTA 22098
Query 280343 CATTCAGTGGCGCTA 280357
| | || ||||||||
Sbjct 22099 CCTGCAATGGCGCTA 22113
>seq2
Length=2210479
Score = 116 bits (128), Expect = 8e-21
Identities = 451/704 (64%), Gaps = 25/704 (4%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||||| ||| || | || ||||||||||| ||||| | | | || || | ||
Sbjct 1078641 CTGCGACTGGTCAATGAAAGCACCACGATCGGCAGCCATCTGCACGACAGTGCGCTGGGA 1078582
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
|| ||||| |||||||||| ||||||| |||| | | |||| || |||||
Sbjct 1078581 AATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGCTGGCAATGTTCTG 1078522
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294
||| || || || |||||| || |||||||||| | || ||||| ||| | |
Sbjct 1078521 GATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAGGCCAAGGTC 1078462
Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354
| || ||||||| | | | |||||| || ||||||| ||||| || || ||
Sbjct 1078461 GACTAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCG 1078402
Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCG-------CAA--AT 293405
||| || || || ||| | ||||| ||| || || ||| ||
Sbjct 1078401 CTGGTAGATATTGGAGGTG-----TACGGCT----CAAAGCACTCGTTGTTGCCAAGAAT 1078351
Query 293406 CTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCTT--- 293462
||| | ||| || || ||||| |||| | |||| ||| | ||||| |
Sbjct 1078350 CTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAG 1078291
Query 293463 CTTGACACGCGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTA-ACACCCCAG 293520
||||| || | || | |||||||| |||| ||| | || | ||| |||
Sbjct 1078290 CTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAG--GTCGGTGGGCTTGACATTCCAC 1078233
Query 293521 AGATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCA 293580
| | | |||||| |||||||| | | ||||| |||||| |||||| | || ||
Sbjct 1078232 ATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCC 1078173
Query 293581 TGCTCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATC 293640
| ||| | | || ||| || ||| | |||||| ||| ||| ||||||||||
Sbjct 1078172 TCCTCCTTGGCGATCTCCACCGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATC 1078113
Query 293641 TCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACA 293700
| |||| |||| ||||||| | || ||||| ||||| ||| || ||| ||
Sbjct 1078112 TGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCA 1078053
Query 293701 TCCTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCC 293760
|| |||||||| ||||| ||||| | |||||| | ||| ||||||| | |||
Sbjct 1078052 TCGGCAAGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 1077993
Query 293761 TCGGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
||||| || | || | ||||||||| | | || ||||||
Sbjct 1077992 TCGGGCACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTT 1077949
>seq26
Length=2648925
Score = 102 bits (112), Expect = 2e-16
Identities = 175/251 (70%), Gaps = 5/251 (2%)
Strand=Plus/Minus
Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375
||||||| || ||| | ||| ||| |||||||| || || |||| |||||||
Sbjct 450519 AGGACGATGCCGAGGATGAGGAGGAG---GGTGAGGACCTTTGCAACTGCACCTTCTCGC 450463
Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435
|||| || |||| |||||||| || ||| |||| |||| | ||||||||||| | |
Sbjct 450462 TCGCCTACGGTGCCAAGATTCTTCTCAACCAGACCCACCTCCGCCTCAAGCGTGGCCAGC 450403
Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495
| || ||||| ||| ||||| || | || ||| ||||| ||||| ||||| |
Sbjct 450402 GCTACGGTCTTTGCGGCCCCAACGGTTCCGGCAAGTCGACTCTCATGCGTGCCATCAACA 450343
Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554
||| ||| | ||||| || || || ||| || || | ||| || | || ||||||
Sbjct 450342 ACGAGCAGGTCGAAGGGTTCCCCAA-GCAGAGCGAAGTCAAGACTGTCTTCGTCGAGCAC 450284
Query 279555 GACATCGACTC 279565
|| | |||||
Sbjct 450283 GATCTGGACTC 450273
>seq9
Length=477563
Score = 100 bits (110), Expect = 6e-16
Identities = 522/823 (63%), Gaps = 19/823 (2%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|| ||||| || | |||||| |||| ||||| ||||||||||||||||||||| |||
Sbjct 51427 TCAAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 51486
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| |||| | ||| || || || | | |||||| || || ||||| |
Sbjct 51487 GCCTTGTAGACCTTGTCGTTGCCGAGAGCCACCAGCAGGCGGTCGGCGACGAACTCGATG 51546
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| | ||||||||| | || || || | ||||| ||||
Sbjct 51547 TACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATG 51606
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTGTGCCAGAGAC 251799
|| |||| || |||| || || || | ||| || | || || | |
Sbjct 51607 AACTCCTGCTCAATGGCCACGGCATCGGTGATGATTCTCTGGATGAC--GTCCTTGCTGG 51664
Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859
|| || || || | ||| | || || | | || | |||||||||||||||
Sbjct 51665 GGC-GGTGCTTGAGGTGGGAGAAGAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCA 51723
Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919
|| ||| | ||||||||| | |||||| ||||||| || || ||| ||| ||||
Sbjct 51724 CGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCCGCGCTTCTTGATCCAG 51783
Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979
||||| | | |||| || ||| | | |||||||| | | ||||| |||
Sbjct 51784 AAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGG 51843
Query 251980 CGCT--CAGCA-AACGA---CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTC 252033
|||| | | | |||| ||||||||| | || | || ||||| | ||||||
Sbjct 51844 CGCTGGCCGTAGGACGACTCCTTGTCCTGAATCCAG--CGGATG-GCCCAGTCGGCCTTC 51900
Query 252034 TTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCC 252093
|| | | |||||| || || || || | ||||| || | |||| | |||
Sbjct 51901 TTGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGGAAGGTGCGCTGCGAGGGCTCC 51960
Query 252094 TCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATC 252153
| |||| | |||| || || ||||| |||| || |||||| || | | |||
Sbjct 51961 TTGATGTAGGTGTCAATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATC 52020
Query 252154 TGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTC--CGTGGAAAAGTTGTTTG 252211
||| | | ||||| || || ||| | || || || |||| | |
Sbjct 52021 TGGAAGCCGTAGAAGCAGCGGGCCTCAGGCACCTGCACCTCGGCGCTGAAACG--CTCGA 52078
Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271
| | |||||| | || ||||| || | || |||||| |||||||| | |||||
Sbjct 52079 CCAGGTTCTCGTTGACAATGCCGTCAGACGCGGCGAAGAAGGCAAGAATGTGCGAGATGA 52138
Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAA 252331
|| |||||| || ||| | || || |||||| || |||| ||| |
Sbjct 52139 AGAAACGCTCGTCATCGGTTAGGCGGTTGTTCCAGTCATGGATATCCTTGGACAGGTCGA 52198
Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374
|| || |||||||||| | || | | ||||||||||||||
Sbjct 52199 TCTCCTCGGCCGTCCAGAACGAGGCCTCAGCCTTCTTGTACAT 52241
>seq27
Length=2670746
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 708918 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 708977
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 708978 CCCGCATCGGGC 708989
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 905443 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 905384
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 905383 CCCGCATCGGGC 905372
>seq23
Length=4176071
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 3874901 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 3874842
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 3874841 CCCGCATCGGGC 3874830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836418094389
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