Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq25 129 1e-24 seq2 116 8e-21 seq26 102 2e-16 seq9 100 6e-16 seq27 86.0 1e-11 seq23 86.0 1e-11 >seq25 Length=4183617 Score = 129 bits (142), Expect = 1e-24 Identities = 439/675 (65%), Gaps = 23/675 (3%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| ||||| |||||||||||||| ||||| | |||||||| || | Sbjct 21449 GTCGGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCCCTGGCCCGCGCCATGCTGCAA 21508 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || || ||||| || || || ||||||||| ||||| | ||||||| Sbjct 21509 AAGGCCGACGTGCTGCTGCTCGACGAACCTACCAACCACTTGGACGTCGCCAACGTTAAG 21568 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| ||||| | | || | | || || || || |||||| Sbjct 21569 TGGCTGGAGGGCTACCTGACCAGCCACCCGGATATCACCAGTCTGATCGTGTCCCACGAC 21628 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || |||||||| || ||||| | | | |||| ||||| |||| || |||||| Sbjct 21629 TCCGGCTTCCTCGACGCCGTCACCACCGACATCTACCACTACGAGCCCAACAAGAAGCTA 21688 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCCGCCT 279993 || | || |||||||||| | || ||||| ||| ||| || ||||| || Sbjct 21689 GCCGTGTACCGCGGCAACCTGGCCGCCTTCGT--CAAGGTGCGGCCCGAGGCCAAGAGCT 21746 Query 279994 ACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 |||| ||| | | ||| || ||| ||||| ||| || | ||| | Sbjct 21747 ACTACACACTGTCTGCCTCCAACGTGCAGTTCCGCTTCCCGCCGCCCGGCATCCTGACCG 21806 Query 280054 GCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111 || ||| || || ||||| |||| | | || ||| || | | || || Sbjct 21807 GCGTCAAGTCCAATACGCGCGCCGTCATCCGCATGACC--AACGTGTCGTACACCTACCC 21864 Query 280112 CAATGGCCCCAA--CATC-TTCAGC--AGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166 ||||| |||||| | || ||||| ||||| | ||| | || | || || Sbjct 21865 CAATGCCCCCAAGCCGTCGCTCAGCGACGTGTC--GTGCCAGCTGTCGCTATCGTCGCGC 21922 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 | | |||| |||||||| ||||| || ||||| ||||| ||||| | ||||| ||| Sbjct 21923 GTGGCCATCATCGGACCCAACGGTGCCGGCAAGTCGACCCTGATCAAGCTGCTGACCGGC 21982 Query 280227 GAGA----CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTA 280282 |||| ||| || | || ||| |||||| |||||| |||| || | || Sbjct 21983 GAGATGATCCCCAGCTCC----GGCCGCGTCGAGAAGCACCCCAACCTGCGTATCGGCTA 22038 Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342 | || |||||||| | | ||| | || | ||||| || | ||| || || || || Sbjct 22039 CATCAAGCAGCACGCCCTAGAGCACGTAGAAATGCACCTAGAGAAGACCCCCAATCAGTA 22098 Query 280343 CATTCAGTGGCGCTA 280357 | | || |||||||| Sbjct 22099 CCTGCAATGGCGCTA 22113 >seq2 Length=2210479 Score = 116 bits (128), Expect = 8e-21 Identities = 451/704 (64%), Gaps = 25/704 (4%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| || | || ||||||||||| ||||| | | | || || | || Sbjct 1078641 CTGCGACTGGTCAATGAAAGCACCACGATCGGCAGCCATCTGCACGACAGTGCGCTGGGA 1078582 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 || ||||| |||||||||| ||||||| |||| | | |||| || ||||| Sbjct 1078581 AATTTCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGCTGGCAATGTTCTG 1078522 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 ||| || || || |||||| || |||||||||| | || ||||| ||| | | Sbjct 1078521 GATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAGGCCAAGGTC 1078462 Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354 | || ||||||| | | | |||||| || ||||||| ||||| || || || Sbjct 1078461 GACTAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCG 1078402 Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCG-------CAA--AT 293405 ||| || || || ||| | ||||| ||| || || ||| || Sbjct 1078401 CTGGTAGATATTGGAGGTG-----TACGGCT----CAAAGCACTCGTTGTTGCCAAGAAT 1078351 Query 293406 CTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCTT--- 293462 ||| | ||| || || ||||| |||| | |||| ||| | ||||| | Sbjct 1078350 CTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAG 1078291 Query 293463 CTTGACACGCGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTA-ACACCCCAG 293520 ||||| || | || | |||||||| |||| ||| | || | ||| ||| Sbjct 1078290 CTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAG--GTCGGTGGGCTTGACATTCCAC 1078233 Query 293521 AGATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCA 293580 | | | |||||| |||||||| | | ||||| |||||| |||||| | || || Sbjct 1078232 ATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCC 1078173 Query 293581 TGCTCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATC 293640 | ||| | | || ||| || ||| | |||||| ||| ||| |||||||||| Sbjct 1078172 TCCTCCTTGGCGATCTCCACCGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATC 1078113 Query 293641 TCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACA 293700 | |||| |||| ||||||| | || ||||| ||||| ||| || ||| || Sbjct 1078112 TGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCA 1078053 Query 293701 TCCTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCC 293760 || |||||||| ||||| ||||| | |||||| | ||| ||||||| | ||| Sbjct 1078052 TCGGCAAGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 1077993 Query 293761 TCGGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 ||||| || | || | ||||||||| | | || |||||| Sbjct 1077992 TCGGGCACGGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTT 1077949 >seq26 Length=2648925 Score = 102 bits (112), Expect = 2e-16 Identities = 175/251 (70%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||||||| || ||| | ||| ||| |||||||| || || |||| ||||||| Sbjct 450519 AGGACGATGCCGAGGATGAGGAGGAG---GGTGAGGACCTTTGCAACTGCACCTTCTCGC 450463 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 |||| || |||| |||||||| || ||| |||| |||| | ||||||||||| | | Sbjct 450462 TCGCCTACGGTGCCAAGATTCTTCTCAACCAGACCCACCTCCGCCTCAAGCGTGGCCAGC 450403 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| ||| ||||| || | || ||| ||||| ||||| ||||| | Sbjct 450402 GCTACGGTCTTTGCGGCCCCAACGGTTCCGGCAAGTCGACTCTCATGCGTGCCATCAACA 450343 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | ||||| || || || ||| || || | ||| || | || |||||| Sbjct 450342 ACGAGCAGGTCGAAGGGTTCCCCAA-GCAGAGCGAAGTCAAGACTGTCTTCGTCGAGCAC 450284 Query 279555 GACATCGACTC 279565 || | ||||| Sbjct 450283 GATCTGGACTC 450273 >seq9 Length=477563 Score = 100 bits (110), Expect = 6e-16 Identities = 522/823 (63%), Gaps = 19/823 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| |||| ||||| ||||||||||||||||||||| ||| Sbjct 51427 TCAAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 51486 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| |||| | ||| || || || | | |||||| || || ||||| | Sbjct 51487 GCCTTGTAGACCTTGTCGTTGCCGAGAGCCACCAGCAGGCGGTCGGCGACGAACTCGATG 51546 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | ||||||||| | || || || | ||||| |||| Sbjct 51547 TACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATG 51606 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTGTGCCAGAGAC 251799 || |||| || |||| || || || | ||| || | || || | | Sbjct 51607 AACTCCTGCTCAATGGCCACGGCATCGGTGATGATTCTCTGGATGAC--GTCCTTGCTGG 51664 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 || || || || | ||| | || || | | || | ||||||||||||||| Sbjct 51665 GGC-GGTGCTTGAGGTGGGAGAAGAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCA 51723 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||| | ||||||||| | |||||| ||||||| || || ||| ||| |||| Sbjct 51724 CGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCCGCGCTTCTTGATCCAG 51783 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| | | |||| || ||| | | |||||||| | | ||||| ||| Sbjct 51784 AAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGG 51843 Query 251980 CGCT--CAGCA-AACGA---CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTC 252033 |||| | | | |||| ||||||||| | || | || ||||| | |||||| Sbjct 51844 CGCTGGCCGTAGGACGACTCCTTGTCCTGAATCCAG--CGGATG-GCCCAGTCGGCCTTC 51900 Query 252034 TTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCC 252093 || | | |||||| || || || || | ||||| || | |||| | ||| Sbjct 51901 TTGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAGGAAGGTGCGCTGCGAGGGCTCC 51960 Query 252094 TCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATC 252153 | |||| | |||| || || ||||| |||| || |||||| || | | ||| Sbjct 51961 TTGATGTAGGTGTCAATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATC 52020 Query 252154 TGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTC--CGTGGAAAAGTTGTTTG 252211 ||| | | ||||| || || ||| | || || || |||| | | Sbjct 52021 TGGAAGCCGTAGAAGCAGCGGGCCTCAGGCACCTGCACCTCGGCGCTGAAACG--CTCGA 52078 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | |||||| | || ||||| || | || |||||| |||||||| | ||||| Sbjct 52079 CCAGGTTCTCGTTGACAATGCCGTCAGACGCGGCGAAGAAGGCAAGAATGTGCGAGATGA 52138 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAA 252331 || |||||| || ||| | || || |||||| || |||| ||| | Sbjct 52139 AGAAACGCTCGTCATCGGTTAGGCGGTTGTTCCAGTCATGGATATCCTTGGACAGGTCGA 52198 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || || |||||||||| | || | | |||||||||||||| Sbjct 52199 TCTCCTCGGCCGTCCAGAACGAGGCCTCAGCCTTCTTGTACAT 52241 >seq27 Length=2670746 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 708918 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 708977 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 708978 CCCGCATCGGGC 708989 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 905443 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 905384 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 905383 CCCGCATCGGGC 905372 >seq23 Length=4176071 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 3874901 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 3874842 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 3874841 CCCGCATCGGGC 3874830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836418094389