Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq25 167 4e-36
seq2 138 2e-27
seq9 127 4e-24
>seq25
Length=4183617
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||| | |||| ||| || ||| ||| || |||||||| || |||||
Sbjct 2767963 CCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 2767904
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || ||||| || ||
Sbjct 2767903 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 2767844
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || |||||||| | ||| ||| || ||||| || | |||||| |||
Sbjct 2767843 ATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACT 2767784
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||||||| || ||||| || || ||||| ||||| ||||||||
Sbjct 2767783 TCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||||||| || |||||||| || |||||||| || || ||
Sbjct 2767735 CCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767676
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| ||||| | || || || || ||
Sbjct 2767675 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767616
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||| ||| |||||||| || | || || ||
Sbjct 2767615 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACC 2767556
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| |||||||| || || || |||||||||||||| ||||||||
Sbjct 2767555 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || |||||||| || |||||||| || || ||
Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| ||||| | || || || || ||
Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||| ||| |||||||| || | || || ||
Sbjct 2767387 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACC 2767328
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||||||||||||||| ||||||||
Sbjct 2767327 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
Score = 95.1 bits (104), Expect = 2e-14
Identities = 199/293 (68%), Gaps = 8/293 (3%)
Strand=Plus/Minus
Query 225350 GCCTCGGGTCGCT--TTGCCACGAAAGCAGACAGGTTTCCGAGGTGCTTCGTGAGCTTGA 225407
|||||||| ||| ||| ||||| || | |||||| ||| ||| | | |||||
Sbjct 21738 GCCTCGGGCCGCACCTTG--ACGAAGGCGGCCAGGTTGCCGCGGTACACGGCTAGCTTCT 21681
Query 225408 GGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGG 225467
||| |||||| || || | | | || ||||| |||||||| ||||||||||
Sbjct 21680 TGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGGCGTCGAGGAAGCCGGAGTCGTGGG 21621
Query 225468 ACACAATGATGGAC--GACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCAC 225525
|||| || | ||| | | | || ||| | |||| ||||| ||
Sbjct 21620 ACACGATCA--GACTGGTGATATCCGGGTGGCTGGTCAGGTAGCCCTCCAGCCACTTAAC 21563
Query 225526 GTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAG 225585
|||| |||||||| |||||| ||||||||||| || ||||| | ||| || | ||
Sbjct 21562 GTTGGCGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGCAGCACGTCGGCCTTTTGCAG 21503
Query 225586 GATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGA 225638
|||||||| | || | |||||||| ||||| || |||||||| |||||||
Sbjct 21502 CATGGCGCGGGCCAGGGCGAGCTTCATCTTCCATCCACCGGACAGCGAGCCGA 21450
>seq2
Length=2210479
Score = 138 bits (152), Expect = 2e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || || || || |||| ||||| || | |||||| || || || ||
Sbjct 113963 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 113904
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | |||||||| || |||||||| |||||||| || ||||| | ||||||| |||
Sbjct 113903 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCG 113844
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | |||||| || ||||| ||||| |||||||||||
Sbjct 113843 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 113785
Score = 113 bits (124), Expect = 8e-20
Identities = 797/1276 (62%), Gaps = 28/1276 (2%)
Strand=Plus/Minus
Query 30984 TCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGACAC-GTT--GG 31040
||||| | |||||||| | ||||||| |||| |||||| || || ||| ||
Sbjct 1078577 TCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGC---TGGCAATGTTCTGG 1078521
Query 31041 ATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCG 31100
|| || || || |||||| || |||||||||| | || |||||| |||| | ||
Sbjct 1078520 ATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAGGCCAAGGTCG 1078461
Query 31101 ATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGG 31160
| || ||||| | | | ||||||||| |||||||||||||||| |||||
Sbjct 1078460 ACTAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGC 1078401
Query 31161 CTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTACGGACCCGCAGATTTGCGCGGT 31219
||| | ||| || ||| |||||| | ||| ||| | || || |||| |||
Sbjct 1078400 TGGTAGATATTGGAGGTGTACGGCTCAA-AGCACTCGTTGTTGCCAAGAATCTGCGAGGT 1078342
Query 31220 GGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACCCTT---CTTGACGCG 31276
|| |||||||| | || ||| || | ||||| | ||||| |
Sbjct 1078341 ACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTG 1078282
Query 31277 CTCTTCGAGGGTCTTCCAGTCA---AGGCGAGTTACCGGCTCGGTTCCCCAGAGGTGATA 31333
||| | ||| | | |||||| ||| || |||| | ||| | || | |
Sbjct 1078281 CTCCTTCAGGCTATCCCAGTCCCAGAGGTCGGTG---GGCTTGACATTCCACATGTCAAA 1078225
Query 31334 CTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCTCTTC 31393
||||| | ||| |||| ||||||| |||||| |||| | | || || | ||| |
Sbjct 1078224 CTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTT 1078165
Query 31394 CGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTT 31453
|||| || |||||| || || || ||| || |||| ||||| | | ||||
Sbjct 1078164 GGCGATCTCCACCGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTT 1078105
Query 31454 GAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAG 31513
|| | | ||| || | || ||||| ||||||||||| || ||| | || |||
Sbjct 1078104 CAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAG 1078045
Query 31514 ACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAAT 31573
|||||| ||||| || || || ||||| |||||||||| || | |||||||| |
Sbjct 1078044 ACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCAC 1077985
Query 31574 TGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTTCTTGGCCAGAATCTTCACGTGCTT 31633
| |||| |||| |||||| | || ||||| | | | | | | | ||
Sbjct 1077984 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 1077925
Query 31634 GCGAAGGTCCTCAAAGTCGTAGGCACCGTTCTTG------ACGTAGTTCTGGAGGACGAT 31687
| | || | ||||||||| || | || || ||| |||||| | || |||
Sbjct 1077924 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAG 1077865
Query 31688 GCTTCCAATGACACACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACA 31747
| | | | ||||| ||| || || | || ||| || | ||||| | ||
Sbjct 1077864 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCA 1077805
Query 31748 AAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTTCACGCTGTC 31807
|| ||| || ||||| || || ||| || |||| ||| | |||
Sbjct 1077804 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTC 1077745
Query 31808 CTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGAC 31867
||||| |||| | | || |||| |||||| |||| | || || || | ||| |
Sbjct 1077744 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAG 1077685
Query 31868 ATCGCGCGCTTTGA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGT 31926
| | || |||| | ||| | | | || ||||| | |||||| ||||||
Sbjct 1077684 CTTCTGAGCCTTGATGGTCTTGCGAC-CGCGACCCTCAGCCTCGTACTTCTCGTACAGGG 1077626
Query 31927 CCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCG 31986
||||| |||||| ||| || |||| |||||||| ||||| |||||| | || |
Sbjct 1077625 CCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAG 1077566
Query 31987 ACCATGCGACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAA 32046
||| || | | ||| |||||||||||||| || ||| | ||||| || |
Sbjct 1077565 TCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGA 1077506
Query 32047 ACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCA 32106
||| || |||||||| ||||| || || || || || || ||| || |
Sbjct 1077505 ACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAACTCGA 1077446
Query 32107 TGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCC 32163
| ||||| ||| ||||||||||| | ||| || | || ||| | || |
Sbjct 1077445 ACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGC 1077386
Query 32164 CCTGGTTTGCGTATGCAGATGTCGTGTCGTACACCTTCAGCATGGGTACGATGCCATCAG 32223
|||||| | || | || ||| | |||| |||||||| | ||| |||| |
Sbjct 1077385 CCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCATTGG 1077326
Query 32224 ACTCGCCATTGGTCCC 32239
|| ||||||||| ||
Sbjct 1077325 ACGTGCCATTGGTTCC 1077310
>seq9
Length=477563
Score = 127 bits (140), Expect = 4e-24
Identities = 548/863 (63%), Gaps = 15/863 (2%)
Strand=Plus/Plus
Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992
|||||||| || ||||||||||| || || || ||| |||||||||| ||||||
Sbjct 51388 TTCATGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCG 51447
Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052
| || || ||| |||||||||||| |||||||| ||| | |||| ||
Sbjct 51448 CCCAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTGTCGTTG 51507
Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112
||||| || | | |||||| || ||||||||||||||||| |||||||| | |
Sbjct 51508 CCGAGAGCCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCG 51567
Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172
|||||||| | || | |||||| | || ||| ||||| |||| || |||| ||
Sbjct 51568 TTCATGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACG 51627
Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232
|| || || ||| |||| | ||||| | | || || ||| | || |
Sbjct 51628 GCATCGGTGATGATTCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTGGGAGAAG 51687
Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292
|| || | || | ||| || |||||||| || ||| | ||||||||| ||
Sbjct 51688 AGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAG 51747
Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAG 10352
||| |||||||| | || || || | |||||| || | |||| | ||| |
Sbjct 51748 GTCAGGCCGGGCATCATGCCGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTG 51807
Query 10353 AACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTC-- 10408
| |||||| ||||| ||| | |||| || ||||||| || |||| ||
Sbjct 51808 A--AGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCT 51865
Query 10409 -GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467
| | || | |||||| | |||||||| | | | ||||| || || |
Sbjct 51866 TGTCCTGAATCCAGCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAA 51925
Query 10468 TAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGG 10527
| || | |||||| | | |||| | |||| || | |||| |||||| |
Sbjct 51926 TGGCGTTGAAGAGGAAGGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCG 51985
Query 10528 AGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCG 10587
|||| |||| ||||| | |||| | |||| | ||||||| || |||
Sbjct 51986 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCT 52045
Query 10588 AGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGC 10647
|| || || || || || | | ||||||||| | || ||||| ||
Sbjct 52046 CAGGCACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAG 52105
Query 10648 TGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTT----CAGT 10703
| || |||||| | || |||||| ||||||| ||||| |||||| | | ||
Sbjct 52106 ACGCGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGGTTAGGCGGT 52165
Query 10704 TTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTG 10763
| || |||||| | ||||| | || | || |||||| | |||||||| | |
Sbjct 52166 TGTT----CCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAG 52221
Query 10764 GCAACGGCCTTCTTGTACATCTG 10786
|| | |||||||||||||||||
Sbjct 52222 GCCTCAGCCTTCTTGTACATCTG 52244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622065911880
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