Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq25 167 4e-36 seq2 138 2e-27 seq9 127 4e-24 >seq25 Length=4183617 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| ||| || ||| ||| || |||||||| || ||||| Sbjct 2767963 CCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 2767904 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || || Sbjct 2767903 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 2767844 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || |||||||| | ||| ||| || ||||| || | |||||| ||| Sbjct 2767843 ATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCCACT 2767784 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| || || ||||| ||||| |||||||| Sbjct 2767783 TCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || |||||||| || |||||||| || || || Sbjct 2767735 CCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767676 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| ||||| | || || || || || Sbjct 2767675 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767616 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| ||| |||||||| || | || || || Sbjct 2767615 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACC 2767556 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || || |||||||||||||| |||||||| Sbjct 2767555 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || |||||||| || |||||||| || || || Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| ||||| | || || || || || Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| ||| |||||||| || | || || || Sbjct 2767387 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACC 2767328 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||||||||| |||||||| Sbjct 2767327 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281 Score = 95.1 bits (104), Expect = 2e-14 Identities = 199/293 (68%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 225350 GCCTCGGGTCGCT--TTGCCACGAAAGCAGACAGGTTTCCGAGGTGCTTCGTGAGCTTGA 225407 |||||||| ||| ||| ||||| || | |||||| ||| ||| | | ||||| Sbjct 21738 GCCTCGGGCCGCACCTTG--ACGAAGGCGGCCAGGTTGCCGCGGTACACGGCTAGCTTCT 21681 Query 225408 GGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGG 225467 ||| |||||| || || | | | || ||||| |||||||| |||||||||| Sbjct 21680 TGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGGCGTCGAGGAAGCCGGAGTCGTGGG 21621 Query 225468 ACACAATGATGGAC--GACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCAC 225525 |||| || | ||| | | | || ||| | |||| ||||| || Sbjct 21620 ACACGATCA--GACTGGTGATATCCGGGTGGCTGGTCAGGTAGCCCTCCAGCCACTTAAC 21563 Query 225526 GTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAG 225585 |||| |||||||| |||||| ||||||||||| || ||||| | ||| || | || Sbjct 21562 GTTGGCGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGCAGCACGTCGGCCTTTTGCAG 21503 Query 225586 GATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGA 225638 |||||||| | || | |||||||| ||||| || |||||||| ||||||| Sbjct 21502 CATGGCGCGGGCCAGGGCGAGCTTCATCTTCCATCCACCGGACAGCGAGCCGA 21450 >seq2 Length=2210479 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || || || || |||| ||||| || | |||||| || || || || Sbjct 113963 TTCTGGATGTTGTAGTCAGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATA 113904 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | |||||||| || |||||||| |||||||| || ||||| | ||||||| ||| Sbjct 113903 AGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCG 113844 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | |||||| || ||||| ||||| ||||||||||| Sbjct 113843 ATGGTGTCCGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGAGTCTTGACGAA 113785 Score = 113 bits (124), Expect = 8e-20 Identities = 797/1276 (62%), Gaps = 28/1276 (2%) Strand=Plus/Minus Query 30984 TCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGACAC-GTT--GG 31040 ||||| | |||||||| | ||||||| |||| |||||| || || ||| || Sbjct 1078577 TCCCAGACCGTCTTGTACAGAGCCTTGATGTCAGCAGGGATGC---TGGCAATGTTCTGG 1078521 Query 31041 ATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCG 31100 || || || || |||||| || |||||||||| | || |||||| |||| | || Sbjct 1078520 ATCGAGCCGTTGTCGGCAATGATGCGGTTCTTCATCGAGTCCGACCACAGGCCAAGGTCG 1078461 Query 31101 ATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGG 31160 | || ||||| | | | ||||||||| |||||||||||||||| ||||| Sbjct 1078460 ACTAGATCGCGGAGCAACCACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGC 1078401 Query 31161 CTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTACGGACCCGCAGATTTGCGCGGT 31219 ||| | ||| || ||| |||||| | ||| ||| | || || |||| ||| Sbjct 1078400 TGGTAGATATTGGAGGTGTACGGCTCAA-AGCACTCGTTGTTGCCAAGAATCTGCGAGGT 1078342 Query 31220 GGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACCCTT---CTTGACGCG 31276 || |||||||| | || ||| || | ||||| | ||||| | Sbjct 1078341 ACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTG 1078282 Query 31277 CTCTTCGAGGGTCTTCCAGTCA---AGGCGAGTTACCGGCTCGGTTCCCCAGAGGTGATA 31333 ||| | ||| | | |||||| ||| || |||| | ||| | || | | Sbjct 1078281 CTCCTTCAGGCTATCCCAGTCCCAGAGGTCGGTG---GGCTTGACATTCCACATGTCAAA 1078225 Query 31334 CTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCTCTTC 31393 ||||| | ||| |||| ||||||| |||||| |||| | | || || | ||| | Sbjct 1078224 CTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTT 1078165 Query 31394 CGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTT 31453 |||| || |||||| || || || ||| || |||| ||||| | | |||| Sbjct 1078164 GGCGATCTCCACCGAGGCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTT 1078105 Query 31454 GAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAG 31513 || | | ||| || | || ||||| ||||||||||| || ||| | || ||| Sbjct 1078104 CAGCTCCCGAGCCTCGGCGGACTCAAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAG 1078045 Query 31514 ACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAAT 31573 |||||| ||||| || || || ||||| |||||||||| || | |||||||| | Sbjct 1078044 ACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCAC 1077985 Query 31574 TGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTTCTTGGCCAGAATCTTCACGTGCTT 31633 | |||| |||| |||||| | || ||||| | | | | | | | || Sbjct 1077984 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 1077925 Query 31634 GCGAAGGTCCTCAAAGTCGTAGGCACCGTTCTTG------ACGTAGTTCTGGAGGACGAT 31687 | | || | ||||||||| || | || || ||| |||||| | || ||| Sbjct 1077924 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAG 1077865 Query 31688 GCTTCCAATGACACACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACA 31747 | | | | ||||| ||| || || | || ||| || | ||||| | || Sbjct 1077864 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCA 1077805 Query 31748 AAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTTCACGCTGTC 31807 || ||| || ||||| || || ||| || |||| ||| | ||| Sbjct 1077804 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTC 1077745 Query 31808 CTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGAC 31867 ||||| |||| | | || |||| |||||| |||| | || || || | ||| | Sbjct 1077744 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAG 1077685 Query 31868 ATCGCGCGCTTTGA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGT 31926 | | || |||| | ||| | | | || ||||| | |||||| |||||| Sbjct 1077684 CTTCTGAGCCTTGATGGTCTTGCGAC-CGCGACCCTCAGCCTCGTACTTCTCGTACAGGG 1077626 Query 31927 CCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCG 31986 ||||| |||||| ||| || |||| |||||||| ||||| |||||| | || | Sbjct 1077625 CCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAG 1077566 Query 31987 ACCATGCGACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAA 32046 ||| || | | ||| |||||||||||||| || ||| | ||||| || | Sbjct 1077565 TCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGA 1077506 Query 32047 ACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCA 32106 ||| || |||||||| ||||| || || || || || || ||| || | Sbjct 1077505 ACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAACTCGA 1077446 Query 32107 TGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCC 32163 | ||||| ||| ||||||||||| | ||| || | || ||| | || | Sbjct 1077445 ACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGC 1077386 Query 32164 CCTGGTTTGCGTATGCAGATGTCGTGTCGTACACCTTCAGCATGGGTACGATGCCATCAG 32223 |||||| | || | || ||| | |||| |||||||| | ||| |||| | Sbjct 1077385 CCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCATTGG 1077326 Query 32224 ACTCGCCATTGGTCCC 32239 || ||||||||| || Sbjct 1077325 ACGTGCCATTGGTTCC 1077310 >seq9 Length=477563 Score = 127 bits (140), Expect = 4e-24 Identities = 548/863 (63%), Gaps = 15/863 (2%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || || || ||| |||||||||| |||||| Sbjct 51388 TTCATGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCG 51447 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 | || || ||| |||||||||||| |||||||| ||| | |||| || Sbjct 51448 CCCAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTGTCGTTG 51507 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 ||||| || | | |||||| || ||||||||||||||||| |||||||| | | Sbjct 51508 CCGAGAGCCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCG 51567 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | || | |||||| | || ||| ||||| |||| || |||| || Sbjct 51568 TTCATGCCCAGCAGGGCGCAGGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACG 51627 Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232 || || || ||| |||| | ||||| | | || || ||| | || | Sbjct 51628 GCATCGGTGATGATTCTCTGGATGACGTCCTTGCTGGGGCGGTGCTTGAGGTGGGAGAAG 51687 Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292 || || | || | ||| || |||||||| || ||| | ||||||||| || Sbjct 51688 AGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAG 51747 Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAG 10352 ||| |||||||| | || || || | |||||| || | |||| | ||| | Sbjct 51748 GTCAGGCCGGGCATCATGCCGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTG 51807 Query 10353 AACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTC-- 10408 | |||||| ||||| ||| | |||| || ||||||| || |||| || Sbjct 51808 A--AGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGCCGTAGGACGACTCCT 51865 Query 10409 -GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467 | | || | |||||| | |||||||| | | | ||||| || || | Sbjct 51866 TGTCCTGAATCCAGCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAA 51925 Query 10468 TAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGG 10527 | || | |||||| | | |||| | |||| || | |||| |||||| | Sbjct 51926 TGGCGTTGAAGAGGAAGGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATGAGCAGCG 51985 Query 10528 AGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCG 10587 |||| |||| ||||| | |||| | |||| | ||||||| || ||| Sbjct 51986 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCT 52045 Query 10588 AGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGC 10647 || || || || || || | | ||||||||| | || ||||| || Sbjct 52046 CAGGCACCTGCACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAG 52105 Query 10648 TGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTT----CAGT 10703 | || |||||| | || |||||| ||||||| ||||| |||||| | | || Sbjct 52106 ACGCGGCGAAGAAGGCAAGAATGTGCGAGATGAAGAAACGCTCGTCATCGGTTAGGCGGT 52165 Query 10704 TTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTG 10763 | || |||||| | ||||| | || | || |||||| | |||||||| | | Sbjct 52166 TGTT----CCAGTCATGGATATCCTTGGACAGGTCGATCTCCTCGGCCGTCCAGAACGAG 52221 Query 10764 GCAACGGCCTTCTTGTACATCTG 10786 || | ||||||||||||||||| Sbjct 52222 GCCTCAGCCTTCTTGTACATCTG 52244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622065911880