Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq25 100 2e-16
seq23 86.0 5e-12
>seq25
Length=4183617
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| |||||||| | | || || || | || || || || || |||||||| ||
Sbjct 2767738 ATACCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2767679
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || || || || || || |||||| ||||||||||||| || |||||
Sbjct 2767678 GACAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGG 2767619
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| ||||| || ||||| |||||| || | | || | ||| || | || |||
Sbjct 2767618 GGGATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCG 2767559
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || ||||||||||| || || || || ||||||||
Sbjct 2767558 ACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | || || || || || |||||||| ||
Sbjct 2767510 ATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2767451
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || || || || || || |||||| ||||||||||||| || |||||
Sbjct 2767450 GACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGG 2767391
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| ||||| || ||||| |||||| || | | || | ||| || | || |||
Sbjct 2767390 GGGATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCG 2767331
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || |||||||| || || || || || ||||||||
Sbjct 2767330 ACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
>seq23
Length=4176071
Score = 86.0 bits (94), Expect = 5e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254
|| || |||||||| ||| | || || ||| ||||| || || ||||| ||||
Sbjct 893475 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 893534
Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314
|| |||||||||||||| |||||||| || ||||| ||||| || | | ||
Sbjct 893535 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 893594
Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374
| || || | ||| || || || | ||| | || ||||| || || || || || |||
Sbjct 893595 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 893654
Query 114375 ATCTGCATGG 114384
||||||||||
Sbjct 893655 ATCTGCATGG 893664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420134251508748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |