Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 500 2e-136 seq9 441 1e-118 >seq2 Length=2210479 Score = 500 bits (554), Expect = 2e-136 Identities = 1253/1888 (66%), Gaps = 69/1888 (4%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||||| || || | || |||| ||| | ||||||||||||||||||||||| | Sbjct 1078774 TGAACTGGATAGGCGCCGCAGCAGCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGAC 1078715 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 || |||| || || ||||||| || | ||| |||| || | || Sbjct 1078714 CAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGGG---------GT 1078664 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 ||| || || ||| || ||||| |||||| | ||| | | || || || | Sbjct 1078663 CCTT---CATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGATCGGCAG 1078607 Query 243921 CCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG 243979 |||| | || || | ||| || || || | |||||||||| | | ||||| | Sbjct 1078606 CCATCTGCACGACAGTGCG-CTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATG 1078548 Query 243980 TGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGC 244039 | | |||| | | |||||||| | |||||| |||| | | |||| || | | Sbjct 1078547 TCAGCAGGGATGCTGGCAATGTTCTGGATCGAGCCGTTGTCGGCAATGATGCGGTTCTTC 1078488 Query 244040 ATGTTATCGTTCCACAGGCCCAAG-CG-CTCCAGCGCCTCGACCAGGTGCCTGTTCACCA 244097 || || ||||||||| | | || || | ||| || || | ||| |||| Sbjct 1078487 ATCGAGTCCGACCACAGGCCAAGGTCGACTAGATCGCG--GAGCAACCACGGGTTGACCA 1078430 Query 244098 CCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGC 244157 |||| |||||||| | ||||| ||||||||||||| ||| | || |||||| | || Sbjct 1078429 CCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGGCTCAAAGC 1078370 Query 244158 TCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGAC 244217 ||| ||||||| || ||||||| || || ||||| |||||||| | || |||||||| Sbjct 1078369 ACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGAC 1078310 Query 244218 TGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAG---TCCCACATGC 244274 |||| | || ||||| || ||| ||| ||| ||| | ||||| | Sbjct 1078309 TGTTGCGAACACCGTGAAGCTTGAT-------CTG--CTCCTTCAGGCTATCCCA---GT 1078262 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 || ||||||| | | |||| |||||||||||||||||| | |||| ||||| Sbjct 1078261 CCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGGATACCCTGAGAGACGG 1078202 Query 244335 GGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCG 244393 | |||||| ||||| | ||||| || || || ||| | || || | || | Sbjct 1078201 GAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACCGAGGCCGAC- 1078143 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453 || || |||| ||||||||||||||||||| || ||||| || || |||| | || | Sbjct 1078142 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGAC 1078083 Query 244454 GTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATG 244513 ||||| |||| || | ||| | ||||| || ||||| || || | |||||| Sbjct 1078082 TCAAAGGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGAACACCAACACCGATG 1078023 Query 244514 GGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATC 244573 || | ||| ||| ||||| | || |||||||||||||| |||| | || || Sbjct 1078022 GGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATG 1077963 Query 244574 ACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTAC 244633 | ||| ||||||||| | || | ||| ||| |||| || |||||| ||| Sbjct 1077962 ATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTCGTGCAGCTTCTCAAAGTCATAC 1077903 Query 244634 TCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGG 244693 || ||| | | | || | | | | || || |||| | ||||||| Sbjct 1077902 ACGC------CCTTGTTG-TAGTCAACGT-----AGGCGGGCAGAGCGAGGGAGGCCAGG 1077855 Query 244694 TTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTG 244753 ||||| || |||||||| || | | ||||| | ||||| ||||| ||||| | Sbjct 1077854 TTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCACAGGTTGGAG 1077795 Query 244754 CACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGC 244813 | ||||| ||||||| || || ||| |||| ||||||| ||||||||| ||| Sbjct 1077794 CTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGC 1077735 Query 244814 ATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCC 244873 |||||||| ||||||||| ||| || |||||| | || ||| || | | |||| Sbjct 1077734 ATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAGCTTCTGAGCC 1077675 Query 244874 TTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCG 244933 |||| ||| ||||| | ||||| |||||||| |||||||||||||||||| Sbjct 1077674 TTGATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCC 1077615 Query 244934 GGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCG 244993 ||| || ||| | || ||||||||| |||||||| ||| |||||||| || Sbjct 1077614 TCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCG 1077555 Query 244994 CCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTG 245053 | || ||| | || ||||||||| ||||||||||| || ||| |||| | || ||| Sbjct 1077554 TTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTG 1077495 Query 245054 GTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACG 245113 | | ||| ||| ||| ||||| | ||| |||| || || || |||||| || Sbjct 1077494 GCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCG 1077435 Query 245114 TGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACC 245173 ||||| ||||| | ||||| || | ||||||||| ||||||||||| ||||||| | Sbjct 1077434 TGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGT----C 1077379 Query 245174 ATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCC 245229 | | | || ||| |||||| | ||| || | || | || || || || ||| Sbjct 1077378 AACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCATTGGACGTGCC 1077319 Query 245230 GTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTA 245285 ||||| || || || | || | | | || | | | ||||||| || | Sbjct 1077318 ATTGGTTCCGGCAATATAAGAACCGGTAGCAC---GGATAC-GGTGGACATTGAGACCAA 1077263 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 || || || ||||||||| | ||||||| |||||| |||||| || ||||| | Sbjct 1077262 TGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATACCCTCAA 1077203 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 ||||||| |||||||| | ||| ||||| || || ||||||| || ||| | | | Sbjct 1077202 TGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTGGGCCTGCGGGGTACCAG 1077143 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCT 245465 |||||| || |||||| ||| ||||| ||| | ||| || | || ||| |||| Sbjct 1077142 CGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCT 1077083 Query 245466 GGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCT 245525 || | | |||| |||||| || ||| | || | ||||| |||||| Sbjct 1077082 CGATGACACGCTCGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATCATGTGCT 1077023 Query 245526 GGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCT 245582 |||| |||| || || || | |||||||| ||| || ||||| || |||| Sbjct 1077022 GGGGGCGCTCGACAATCTTGCCGTCAAG---CTTGAGCAGGTAAGACCGCTCTAGGGTCT 1076966 Query 245583 TGAACCCAAAGTACGAGTAGCCAAAGTC 245610 |||| ||||||||| |||| ||||| Sbjct 1076965 TGAAGCCAAAGTACTGGTAGTTGAAGTC 1076938 >seq9 Length=477563 Score = 441 bits (488), Expect = 1e-118 Identities = 620/860 (72%), Gaps = 28/860 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| ||||||||||| |||||| Sbjct 52250 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 52191 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | | |||| | || | || | || |||| || ||| || Sbjct 52190 TCCAAGGATATCCATGACTGGAACA-ACCGCCTAACCGATGACGAGCGTTTCTTCATCTC 52132 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||||||||| ||||||||||| ||||| |||||||||| | | Sbjct 52131 GCACATTCTTGCCTTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCG 52072 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||||||| |||||| ||||||||||||||||||||||| || Sbjct 52071 TTTCAGCGCCGAGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 52012 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| | ||||||| |||| |||||| ||| || Sbjct 52011 GGAGAACATCCACTCCGAGACCTACTC---GCTGCTCATTGACACCTACATCAAGGAGCC 51955 Query 42593 CGTCG-AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 | ||| |||| | | || ||||| ||||| || || || ||||||||| ||||||| Sbjct 51954 C-TCGCAGCGCACCTTCCTCTTCAACGCCATTGACACCATCCCCTGCATCCGCAAGAAGG 51896 Query 42652 CGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAG 42711 | |||||||| || |||||| || || | | | |||| || | ||||| | Sbjct 51895 CCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGTCGTCCTACGGCCAGCGCCTGGTTG 51836 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| ||||||||||||||||||||||| || |||||| | || ||||||||| ||| Sbjct 51835 CCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTTCTGGATCA 51776 Query 42772 AGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || || | ||||||||| || |||||||| ||||| || ||| | ||||||| Sbjct 51775 AGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGG 51716 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | ||||| | ||||| |||||||| || ||||| |||||||| |||| ||| | Sbjct 51715 GTCTGCACACCGACTTCGCCTGCCTGCTCTTCTC---CCACCTCAAGCACCGCCCCAGCA 51659 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 |||| ||| | |||||||| || ||||||| || ||| |||||||| |||| Sbjct 51658 AGGACGTCATCCAGAGAATCATCACCGATGCCGTGGCCATTGAGCAGGAGTTCATCACCG 51599 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 || | |||||| ||||| | ||||||||| | ||| ||| |||||||| ||| Sbjct 51598 AGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGT 51539 Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCTACAACACGC 43065 |||||||||| | |||| | | ||| |||| || || | ||||||| | Sbjct 51538 TCGTCGCCGAC---CGCCTG---CTGGTGGCTCTCGGCAACGACAAGGTCTACAAGGCCA 51485 Query 43066 CGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125 | |||||||||||| ||||||||||||||| ||| |||||||||||||| || |||| Sbjct 51484 CCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGA 51425 Query 43126 AGCGCGTCGCCGACTACCAG 43145 |||| || | |||||||||| Sbjct 51424 AGCGTGTTGGCGACTACCAG 51405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338857677040