Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq25 140 8e-28
seq1 91.5 3e-13
>seq25
Length=4183617
Score = 140 bits (154), Expect = 8e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| |||||||| || | || || || || | ||||| || || ||||| || ||||||
Sbjct 2767966 TGGCCACCGCGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 2767907
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| || || || | || || || ||||| ||||| ||||| ||
Sbjct 2767906 GAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGG 2767847
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || |||||||| || |||| |||||||| || || | ||| |||||
Sbjct 2767846 GGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCAATGGTATCCGATGATTCC 2767787
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 2767786 ACTTCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 2767737
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | |||| ||| || || ||||| || ||||| |
Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || ||||| |||||||| |||||||| ||| |||
Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || |||| |||||||| || || | ||| ||| || ||
Sbjct 2767387 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACC 2767328
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 2767327 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || | |||| ||| || || ||||| || ||||| |
Sbjct 2767735 CCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767676
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || ||||| |||||||| |||||||| ||| |||
Sbjct 2767675 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767616
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || |||| |||||||| || || | ||| ||| || ||
Sbjct 2767615 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACC 2767556
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 2767555 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
>seq1
Length=1101474
Score = 91.5 bits (100), Expect = 3e-13
Identities = 202/303 (67%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 326027 TGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATG 326086
|||| ||||| |||| ||||| || ||| | ||||| |||| |||| ||||
Sbjct 1012812 TGGAGGAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGGCCATG 1012871
Query 326087 ATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGG 326146
||||||| |||||| || || || |||||| | ||||| | | | ||
Sbjct 1012872 ATCATCAAATGACCATACCGCAGACCCTTCGTGTCGGTATACACGGTCTTGTGCTTCAGT 1012931
Query 326147 CCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGATGCA 326206
|| |||| || |||| | |||||| | ||||||| |||| | || || ||
Sbjct 1012932 CCCAGAAACTGCTTGATGTTTTGGATTTCCTGGTTCTTCATGATCTGATCAACCGACGCG 1012991
Query 326207 TCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 326266
||||||||||||| || |||||||| || |||||||| ||| | ||| || |||
Sbjct 1012992 TCGCGGACGTTCAGCAGCTTTCCACGCAGCGGGAACACACCAATACGGTCGGGATCGAGG 1013051
Query 326267 ACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTG 326326
| || | || || | || | || ||| || || || |||||||| ||||| |||
Sbjct 1013052 ATGGCACGGCCAGCAACAGCCAAACTCTTTGCAGAGTCACCTTCCGTCAGGATGAGCGTG 1013111
Query 326327 CAC 326329
|||
Sbjct 1013112 CAC 1013114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653961684662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |