Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq26 105 1e-17
seq9 104 5e-17
seq25 89.7 1e-12
seq1 87.8 4e-12
>seq26
Length=2648925
Score = 105 bits (116), Expect = 1e-17
Identities = 390/601 (65%), Gaps = 24/601 (4%)
Strand=Plus/Plus
Query 333337 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 333396
||||||| ||||| |||| ||| ||| |||| ||||| | ||||||||| |||||
Sbjct 449482 AACGCCACTGGATGTACTCCGAGGGAGTCTTGTCCAGATGGTTATCGATGTGGGCGAAAG 449541
Query 333397 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTGGTGG 333456
| ||||| | |||||||| ||| || || |||| ||| ||| |||||
Sbjct 449542 CGTGCTGCTTGATGTAAGCAATACGGATGTTCTCGTGCTGGTAAATCTCACCGGCGGTGG 449601
Query 333457 CTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTTCGCCTA 333516
||| | || || ||||| || ||||| || ||||| || || || ||| |
Sbjct 449602 GGACCAGCTCTCCGGTCAGCACGTTGATGAGCGTCGACTTTCCGGCTCCGTTGGGGCCAA 449661
Query 333517 CCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTT 333576
||| |||| | ||| | || || |||| | | | | ||| | ||
Sbjct 449662 TAACAGCAATACGCGAGCTGAGAGAGCACTGGAAGGTGATATCGGCAATCTGGGGCTTGG 449721
Query 333577 CCGTACCCGGATACTTGAACCCCACACCGCGTAGCTT-CATGATGGCACGGTCCTTCGAA 333635
|| || || |||| ||| | || | ||||| || ||||| | |||| |
Sbjct 449722 AGGTGCCAGGGTACTGGAAGCTCAT-CTTAGTAGCACGCAGAATGGCCTTGGCCTTGGTC 449780
Query 333636 GTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGG 333695
||| |||||||||||| |||||||||||||| | || ||| || | |||
Sbjct 449781 TTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCAATCTCCGAGGCACCAAGC 449840
Query 333696 GCGTAGTAA---CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 333752
|||||||| | || || ||| | ||| |||||||||| ||| || ||||||
Sbjct 449841 TCGTAGTAAGACTTGGCCGA---GGGGCACTTGCGCACGAACTCGCGCAGGTTACCCTTG 449897
Query 333753 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT-GCAAACAGCGTCGAG 333811
|| ||| ||||| | | | ||||| ||||| || | | | ||| || ||||||
Sbjct 449898 TAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGATGAT-GTGCTGGCACACGTTGTCGAG 449953
Query 333812 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG----GTTGATCAGGT 333867
||| || |||||||| ||||| || | |||| || | ||| ||| |||||||
Sbjct 449954 GAAGCCAGAGTCGTGGGACACGAT---GATCGAA--GTGC--AAGGAGAGTTCATCAGGT 450006
Query 333868 ATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTA 333927
| || |||||| | ||||| |||| | ||||||||| |||||||| || || |
Sbjct 450007 AGTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAGCAGCA 450066
Query 333928 G 333928
|
Sbjct 450067 G 450067
Score = 95.1 bits (104), Expect = 3e-14
Identities = 173/251 (69%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164
|||||||| ||| ||| | || ||||| ||| |||||||| || ||| | |||| |
Sbjct 450244 AGTCAATGGTAGTCATCTCAGTATCGGCAGAGTCCAGATCGTGCTCGACGAAGACAGTCT 450303
Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223
| | | || || |||||||||||| | ||| |||| || || ||||| |||
Sbjct 450304 TGACTTCGCTCTGCTT-GGGGAACCCTTCGACCTGCTCGTTGTTGATGGCACGCATGAGA 450362
Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283
|| || || || | ||||| || || || ||||||||||| | |||||||| || |
Sbjct 450363 GTCGACTTGCCGGAACCGTTGGGGCCGCAAAGACCGTAGCGCTGGCCACGCTTGAGGCGG 450422
Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343
| | || | ||| |||||||| || |||| || || || || || || | ||
Sbjct 450423 AGGTGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCGAGCGAGAAGGTGCAGTTGCAA 450482
Query 334344 AGATCCTCACC 334354
|| ||||||||
Sbjct 450483 AGGTCCTCACC 450493
>seq9
Length=477563
Score = 104 bits (114), Expect = 5e-17
Identities = 176/255 (69%), Gaps = 0/255 (0%)
Strand=Plus/Minus
Query 243501 AATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG 243560
||||||||| || || || | | || |||| ||||| ||| ||| | || |||
Sbjct 51642 AATCATCACCGATGCCGTGGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGC 51583
Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620
|| | ||||||||| | || ||| ||||||||||| ||||| ||||||||| |
Sbjct 51582 CCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 51523
Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680
| | || || || | || || || ||||| ||| |||||||| | ||| |||||
Sbjct 51522 GCTGGTGGCTCTCGGCAACGACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGA 51463
Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACG 243740
| ||| ||||| || || || |||||||| || |||||||| | || || ||
Sbjct 51462 GAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTACCAGAA 51403
Query 243741 CCCTGGTGTGATGAA 243755
||||||| |||||
Sbjct 51402 GGCTGGTGTCATGAA 51388
>seq25
Length=4183617
Score = 89.7 bits (98), Expect = 1e-12
Identities = 196/294 (67%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 333698 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 333757
|||||| ||| | ||||| ||| ||| ||||| ||| ||| || || ||||
Sbjct 21751 GTAGTAGCTCTTGGCCTCGGGCCGCACCTTGACGAAGGCGGCCAGGTTGCCGCGGTACAC 21692
Query 333758 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 333817
||||| ||| || ||||| ||| || |||| || ||||||||||| ||
Sbjct 21691 GGCTAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGGCGTCGAGGAAGCC 21632
Query 333818 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAG 333877
||||||||| ||||| |||| | | | ||| || || ||||||| | |||
Sbjct 21631 GGAGTCGTGGGACACGATCAGACTGGTGATATCCGGGTGGCTGGTCAGGTAGCCCTCCAG 21572
Query 333878 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGC 333937
|||| | ||||| | || | |||||||| || ||||| || || || | | ||
Sbjct 21571 CCACTTAACGTTGGCGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGCAGCACGTCGGC 21512
Query 333938 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991
|| | ||||| || || || || ||||| ||||| ||||| || || || ||
Sbjct 21511 CTTTTGCAGCATGGCGCGGGCCAGGGCGAGCTTCATCTTCCATCCACCGGACAG 21458
>seq1
Length=1101474
Score = 87.8 bits (96), Expect = 4e-12
Identities = 201/303 (66%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 298148 TGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATG 298207
|||| ||||| |||| ||||| || ||| | ||||| |||| |||| ||||
Sbjct 1012812 TGGAGGAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGGCCATG 1012871
Query 298208 ATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGG 298267
||||||| |||||| || || || |||||| | ||||| | | | ||
Sbjct 1012872 ATCATCAAATGACCATACCGCAGACCCTTCGTGTCGGTATACACGGTCTTGTGCTTCAGT 1012931
Query 298268 CCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGATGCA 298327
|| |||| || |||| | |||||| | ||||||| |||| | || || ||
Sbjct 1012932 CCCAGAAACTGCTTGATGTTTTGGATTTCCTGGTTCTTCATGATCTGATCAACCGACGCG 1012991
Query 298328 TCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 298387
|||||||| |||| || |||||||| || |||||||| ||| | ||| || |||
Sbjct 1012992 TCGCGGACGTTCAGCAGCTTTCCACGCAGCGGGAACACACCAATACGGTCGGGATCGAGG 1013051
Query 298388 ACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTG 298447
| || | || || | || | || ||| || || || |||||||| ||||| |||
Sbjct 1013052 ATGGCACGGCCAGCAACAGCCAAACTCTTTGCAGAGTCACCTTCCGTCAGGATGAGCGTG 1013111
Query 298448 CAC 298450
|||
Sbjct 1013112 CAC 1013114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102879590211150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |