Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq26 105 1e-17 seq9 104 5e-17 seq25 89.7 1e-12 seq1 87.8 4e-12 >seq26 Length=2648925 Score = 105 bits (116), Expect = 1e-17 Identities = 390/601 (65%), Gaps = 24/601 (4%) Strand=Plus/Plus Query 333337 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 333396 ||||||| ||||| |||| ||| ||| |||| ||||| | ||||||||| ||||| Sbjct 449482 AACGCCACTGGATGTACTCCGAGGGAGTCTTGTCCAGATGGTTATCGATGTGGGCGAAAG 449541 Query 333397 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTGGTGG 333456 | ||||| | |||||||| ||| || || |||| ||| ||| ||||| Sbjct 449542 CGTGCTGCTTGATGTAAGCAATACGGATGTTCTCGTGCTGGTAAATCTCACCGGCGGTGG 449601 Query 333457 CTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTTCGCCTA 333516 ||| | || || ||||| || ||||| || ||||| || || || ||| | Sbjct 449602 GGACCAGCTCTCCGGTCAGCACGTTGATGAGCGTCGACTTTCCGGCTCCGTTGGGGCCAA 449661 Query 333517 CCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTT 333576 ||| |||| | ||| | || || |||| | | | | ||| | || Sbjct 449662 TAACAGCAATACGCGAGCTGAGAGAGCACTGGAAGGTGATATCGGCAATCTGGGGCTTGG 449721 Query 333577 CCGTACCCGGATACTTGAACCCCACACCGCGTAGCTT-CATGATGGCACGGTCCTTCGAA 333635 || || || |||| ||| | || | ||||| || ||||| | |||| | Sbjct 449722 AGGTGCCAGGGTACTGGAAGCTCAT-CTTAGTAGCACGCAGAATGGCCTTGGCCTTGGTC 449780 Query 333636 GTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGG 333695 ||| |||||||||||| |||||||||||||| | || ||| || | ||| Sbjct 449781 TTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCAATCTCCGAGGCACCAAGC 449840 Query 333696 GCGTAGTAA---CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTG 333752 |||||||| | || || ||| | ||| |||||||||| ||| || |||||| Sbjct 449841 TCGTAGTAAGACTTGGCCGA---GGGGCACTTGCGCACGAACTCGCGCAGGTTACCCTTG 449897 Query 333753 TACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT-GCAAACAGCGTCGAG 333811 || ||| ||||| | | | ||||| ||||| || | | | ||| || |||||| Sbjct 449898 TAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGATGAT-GTGCTGGCACACGTTGTCGAG 449953 Query 333812 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG----GTTGATCAGGT 333867 ||| || |||||||| ||||| || | |||| || | ||| ||| ||||||| Sbjct 449954 GAAGCCAGAGTCGTGGGACACGAT---GATCGAA--GTGC--AAGGAGAGTTCATCAGGT 450006 Query 333868 ATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTA 333927 | || |||||| | ||||| |||| | ||||||||| |||||||| || || | Sbjct 450007 AGTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAGCAGCA 450066 Query 333928 G 333928 | Sbjct 450067 G 450067 Score = 95.1 bits (104), Expect = 3e-14 Identities = 173/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| ||| ||| | || ||||| ||| |||||||| || ||| | |||| | Sbjct 450244 AGTCAATGGTAGTCATCTCAGTATCGGCAGAGTCCAGATCGTGCTCGACGAAGACAGTCT 450303 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || |||||||||||| | ||| |||| || || ||||| ||| Sbjct 450304 TGACTTCGCTCTGCTT-GGGGAACCCTTCGACCTGCTCGTTGTTGATGGCACGCATGAGA 450362 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || || || ||||||||||| | |||||||| || | Sbjct 450363 GTCGACTTGCCGGAACCGTTGGGGCCGCAAAGACCGTAGCGCTGGCCACGCTTGAGGCGG 450422 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| |||||||| || |||| || || || || || || | || Sbjct 450423 AGGTGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCGAGCGAGAAGGTGCAGTTGCAA 450482 Query 334344 AGATCCTCACC 334354 || |||||||| Sbjct 450483 AGGTCCTCACC 450493 >seq9 Length=477563 Score = 104 bits (114), Expect = 5e-17 Identities = 176/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 243501 AATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG 243560 ||||||||| || || || | | || |||| ||||| ||| ||| | || ||| Sbjct 51642 AATCATCACCGATGCCGTGGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGC 51583 Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 || | ||||||||| | || ||| ||||||||||| ||||| ||||||||| | Sbjct 51582 CCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 51523 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | | || || || | || || || ||||| ||| |||||||| | ||| ||||| Sbjct 51522 GCTGGTGGCTCTCGGCAACGACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGA 51463 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACG 243740 | ||| ||||| || || || |||||||| || |||||||| | || || || Sbjct 51462 GAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTACCAGAA 51403 Query 243741 CCCTGGTGTGATGAA 243755 ||||||| ||||| Sbjct 51402 GGCTGGTGTCATGAA 51388 >seq25 Length=4183617 Score = 89.7 bits (98), Expect = 1e-12 Identities = 196/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 333698 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 333757 |||||| ||| | ||||| ||| ||| ||||| ||| ||| || || |||| Sbjct 21751 GTAGTAGCTCTTGGCCTCGGGCCGCACCTTGACGAAGGCGGCCAGGTTGCCGCGGTACAC 21692 Query 333758 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 333817 ||||| ||| || ||||| ||| || |||| || ||||||||||| || Sbjct 21691 GGCTAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGGCGTCGAGGAAGCC 21632 Query 333818 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAG 333877 ||||||||| ||||| |||| | | | ||| || || ||||||| | ||| Sbjct 21631 GGAGTCGTGGGACACGATCAGACTGGTGATATCCGGGTGGCTGGTCAGGTAGCCCTCCAG 21572 Query 333878 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGC 333937 |||| | ||||| | || | |||||||| || ||||| || || || | | || Sbjct 21571 CCACTTAACGTTGGCGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGCAGCACGTCGGC 21512 Query 333938 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 || | ||||| || || || || ||||| ||||| ||||| || || || || Sbjct 21511 CTTTTGCAGCATGGCGCGGGCCAGGGCGAGCTTCATCTTCCATCCACCGGACAG 21458 >seq1 Length=1101474 Score = 87.8 bits (96), Expect = 4e-12 Identities = 201/303 (66%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 298148 TGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATG 298207 |||| ||||| |||| ||||| || ||| | ||||| |||| |||| |||| Sbjct 1012812 TGGAGGAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGGCCATG 1012871 Query 298208 ATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGG 298267 ||||||| |||||| || || || |||||| | ||||| | | | || Sbjct 1012872 ATCATCAAATGACCATACCGCAGACCCTTCGTGTCGGTATACACGGTCTTGTGCTTCAGT 1012931 Query 298268 CCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGATGCA 298327 || |||| || |||| | |||||| | ||||||| |||| | || || || Sbjct 1012932 CCCAGAAACTGCTTGATGTTTTGGATTTCCTGGTTCTTCATGATCTGATCAACCGACGCG 1012991 Query 298328 TCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 298387 |||||||| |||| || |||||||| || |||||||| ||| | ||| || ||| Sbjct 1012992 TCGCGGACGTTCAGCAGCTTTCCACGCAGCGGGAACACACCAATACGGTCGGGATCGAGG 1013051 Query 298388 ACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTG 298447 | || | || || | || | || ||| || || || |||||||| ||||| ||| Sbjct 1013052 ATGGCACGGCCAGCAACAGCCAAACTCTTTGCAGAGTCACCTTCCGTCAGGATGAGCGTG 1013111 Query 298448 CAC 298450 ||| Sbjct 1013112 CAC 1013114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879590211150