Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 212 7e-50 seq9 96.9 4e-15 >seq2 Length=2210479 Score = 212 bits (234), Expect = 7e-50 Identities = 859/1339 (64%), Gaps = 37/1339 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 |||||||||| ||||| |||||||||||||| ||||| || | || || | ||| | Sbjct 1078397 TAGATATTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTG 1078338 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| |||| || || ||||| || | ||| | | | || | ||| Sbjct 1078337 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCC 1078278 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 || ||| |||||||| || | | | || | | |||||| |||||||| ||| Sbjct 1078277 TTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGG 1078218 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 ||||| || ||| | || || |||||| | || ||| | ||||| ||| || | Sbjct 1078217 ATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATC 1078158 Query 114182 T---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 114238 | | ||| ||| || || ||||| || || ||||| || || | |||| Sbjct 1078157 TCCACCGAG---GCCGACAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGC 1078101 Query 114239 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACATCCGCGAGACC 114297 || |||||| |||| ||||| | | | ||| | | || |||| || ||||| Sbjct 1078100 TCCCGAGCCTCGGCGGACTCAAA-GGGCATGCGCAGAGCGAGGAAAGCATCGGCAAGACC 1078042 Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CAC 114354 || ||||| | || || ||||| || | ||| || || ||||| ||| ||| Sbjct 1078041 CTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC---CTCGGGCAC 1077985 Query 114355 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 114414 ||| || || ||| || | | || || || | || ||| | |||| || Sbjct 1077984 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 1077925 Query 114415 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 114474 || ||||| || | ||| | || | | | | || || || || |||| Sbjct 1077924 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAG 1077865 Query 114475 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 114534 || ||||| || ||||||| |||||| | | |||||| || || || || || Sbjct 1077864 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCA 1077805 Query 114535 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 114594 || || || || |||||| |||| |||||| || || ||| ||| || || Sbjct 1077804 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTC 1077745 Query 114595 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA- 114653 |||||| |||||| | || | || ||||| || || | || ||| || || | ||| | Sbjct 1077744 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAG 1077685 Query 114654 CATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGA 114710 | || | | || | ||| ||| | || ||||| |||||||||| ||| | Sbjct 1077684 CTTCTGAGCCTTG----ATGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACA 1077629 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 |||| || ||||| || || | || | || || || || | ||||| | | Sbjct 1077628 GGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCA 1077569 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 ||| ||| | | || ||| || |||||||||||||| || |||||||| ||||| Sbjct 1077568 GAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCA 1077509 Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 114890 ||| | ||| | ||| | || || | || ||||| |||| |||| || | Sbjct 1077508 GGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAACT 1077449 Query 114891 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGAC 114944 | | | || ||||||||||| || ||||| | || | | || ||| | Sbjct 1077448 CGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTT--GTT 1077391 Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 | || |||||| ||||| | || ||| || || ||||||||||| || ||||||| Sbjct 1077390 G-CCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATAC 1077332 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 ||| || |||||| || || |||| ||| | || | || | |||| | Sbjct 1077331 CATTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGACAT 1077272 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 | |||||| || || ||| ||| ||||| ||||| | |||| || | |||| Sbjct 1077271 TGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGA 1077212 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCT-T 115183 | || || || |||| |||| | | | |||||||| ||| | || ||||| Sbjct 1077211 TACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTG-GGCCTGC 1077153 Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCT 115241 || |||||||||||||||||||| || | || ||| ||| | | |||| ||||||| Sbjct 1077152 GGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACATCA 1077095 Query 115242 TATCGTAGGTCTCCAAGAC 115260 | ||||||||| | ||| Sbjct 1077094 AGTTGTAGGTCTCGATGAC 1077076 >seq9 Length=477563 Score = 96.9 bits (106), Expect = 4e-15 Identities = 290/443 (65%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| |||||||| |||||||| ||||| ||| ||| ||| |||||||| Sbjct 51408 GTAGTCGCCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGCGAGATGTTCTCCAT 51467 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || || || ||||| | | || | | |||| | || | | || || Sbjct 51468 GAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTGTCGTTGCCGAGAGCCACC--AGCAGG 51525 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | |||| |||| ||||||| |||| | |||||| || | ||| Sbjct 51526 CGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGGGCG 51585 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || || || ||||||| ||| |||||| ||||||| || | ||| Sbjct 51586 CAGGGCAGAGCCTCGGTGATGAACTCCTGCTCAATGGCCACGGCATCGGTGATGATTCTC 51645 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTC 126054 || ||| |||| | || | | || | || |||||| ||| || || Sbjct 51646 TGGATGACGTCCTTGCTGGGGCGGT-GCTTGAGGTGGGAGAAGAGCAGGCAGGCGAAGTC 51704 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| |||||||||||||| ||||| || || || |||||| ||| || ||||| | Sbjct 51705 GGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAT 51764 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 || |||||||| | |||||| |||| | || | ||| ||||||||| ||||| || Sbjct 51765 GCCGCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGAC 51824 Query 126175 ACACGCGAACGCAAAGAGACGCT 126197 || || |||| || |||| Sbjct 51825 GGCGGCAAAGGCAACCAGGCGCT 51847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353383459320