Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq25 95.1 1e-14
seq23 91.5 1e-13
>seq25
Length=4183617
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | |||| || || || || || |||||||| || | | |||||| ||||
Sbjct 2767720 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 2767661
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| || || | ||||| |||||||| || || || || || || || ||
Sbjct 2767660 TCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 2767601
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || || | |||||| | || || || | ||| | ||||
Sbjct 2767600 TGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACCTCCAGAGTGATGGTC 2767541
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||||| || || ||||| || |||||
Sbjct 2767540 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||||||||| | | || || ||||| | || || || || || |||||||| || |
Sbjct 2767280 ACCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 2767221
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||| || |||| |||||||||||||| ||| | || || ||||| ||||| |||||
Sbjct 2767220 GAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGG 2767161
Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359
|| || || || || || || ||
Sbjct 2767160 GATGCCCTCCTTGTCCTGGATCTT 2767137
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | |||| || || || || || |||||||| || | | |||||| ||||
Sbjct 2767492 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 2767433
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| || || | ||||| |||||||| || || || || || || || ||
Sbjct 2767432 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 2767373
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409
|| || || ||| || || | ||||| || || || || || | ||| | ||
Sbjct 2767372 TGAATCTTCGACTTCACGTTATCGATGGTATC--CGACGACTCGACCTCAAGAGTGATGG 2767315
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||||| | || || ||||| || |||||
Sbjct 2767314 TCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
>seq23
Length=4176071
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315
|| || |||||||| || | | |||||| | || |||||||||||||| ||| | ||
Sbjct 893475 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 893534
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375
|| ||||| ||||| || ||||| || || || || || || || ||| ||| ||
Sbjct 893535 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 893594
Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435
| ||||| || ||||| || | || | |||||||| || | || || ||||||
Sbjct 893595 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 893654
Query 64436 ATTTGCAT 64443
|| |||||
Sbjct 893655 ATCTGCAT 893662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644618878760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |