Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 282 4e-71 >seq2 Length=2210479 Score = 282 bits (312), Expect = 4e-71 Identities = 1087/1681 (65%), Gaps = 56/1681 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || || ||| ||| ||||| |||||| | || ||| Sbjct 1076944 AACTACCAGTACTTTGGCTTCAAGACCCTAGAGCGGTCTTACCTGCTCAAGCTTGACGGC 1077003 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||| || || || || | ||||| || || | || || || || Sbjct 1077004 AAGATTGTCGAGCGCCCCCAGCACATGATCATGCGTGTTGCTGTTGGCATCTGGGGAGAC 1077063 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | ||| | | | | || ||| |||| | ||| ||| Sbjct 1077064 AACGTCGAGCGTGTCATCGAGACCTACAACTTGATGTCCAGCAAGTTCTTCACCCATGCC 1077123 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 |||| ||||| |||||||| || |||||| | | ||| | || ||||| |||||| | Sbjct 1077124 TCCCCCACCCTCTTCAACGCTGGTACCCCGCAGGCCCAGCTCTCGTCGTGCTTCCTGGTT 1077183 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | |||| ||||||| ||| || | || Sbjct 1077184 GAC-ATGAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGCGCCATGAT 1077242 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCC 94071 ||| || || || || || || ||| ||||||| |||| ||||| | ||||| Sbjct 1077243 CTCCAAGATGGCTGGTGGCATTGGTCTCAATGTCCAC--CGTATCCGTGCTACCGGTTCT 1077300 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || || ||| ||||||||||| ||||| || || |||| ||||| || || |||||| Sbjct 1077301 TATATTGCCGGAACCAATGGCACGTCCAATGGTATCATCCCCATGCTTCGCGTGTTCAAC 1077360 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || ||||| || |||||||| || | | | || | || || |||| Sbjct 1077361 AACACCGCCCGCTATGTTGACCAGGGCGGCAACAAGCGCCCCGGCGCCTTTGCCATCTAC 1077420 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 |||||||| |||||||| |||||| | ||||| || ||||| ||||| || || || Sbjct 1077421 CTCGAGCCGTGGCACGCCGACGTGTTCGAGTTCATGGATCTGCGCAAGAATCATGGAAAG 1077480 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | |||||||| | ||| ||||| ||| | || || || || ||||| Sbjct 1077481 GAGGAGGTCCGCGCCAGAGATTTGTTCCTGGCTCTGTGGATCCCCGATCTCTTCATGAAG 1077540 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || |||||||| ||| ||| |||| ||| | || ||||| || || ||||| || || Sbjct 1077541 CGAGTCGAGAAGAACGCCGAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGTCTTGCC 1077600 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGC 94430 ||| | || | || || | | |||| | ||||| | |||| | || Sbjct 1077601 GACTGCTACGGCGAGGAGTTCGAGGCCCTGTACGAGAAGTACGAGGCTGAGGGTCGCGGT 1077660 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | ||| || | ||| |||||||||| | ||| | || | ||| ||||| Sbjct 1077661 C-GCAAGACCATCAAGGCTCAGAAGCTGTGGTACGCCATCCTCGAGGCTCAGACCGAGAC 1077719 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 || | |||| ||| ||| |||||| | ||| |||| |||| ||||||| || ||| Sbjct 1077720 CGGCAACCCCTTCATGCTGTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAGAACC 1077778 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || || ||||| || |||||||| ||||| | ||||| |||| || | Sbjct 1077779 TGGGTACCATTCGCAGCTCCAACCTGTGCACAGAGATCATTGAGTACTGCGCTCCCGATG 1077838 Query 94610 AGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACA 94669 || | |||||||| ||||||| |||| || ||| || | | ||| || ||||| Sbjct 1077839 AGGTGGCTGTGTGCAACCTGGCCTCCCTCGCTCTGCCCGCCTACGT------TGACTACA 1077892 Query 94670 CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-CTTG 94728 | | || | || || | ||| ||| || | || || | ||||| ||| Sbjct 1077893 --ACAAGGGCGT-GTATGACTTTGAGAAGC---TGCA---CGAGGTCACCATGGTGGTTG 1077943 Query 94729 -----AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 ||||||||| | | || || ||| ||||||||| || ||||| ||| Sbjct 1077944 TCCGCAACCTGAACCGCATCATTGATGTCAACCACTACCCCGTGCCCGAGGCTCGCAACA 1078003 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 ||| || || || |||||||| | || || |||||| | || || || | | Sbjct 1078004 GCAACATGCGCCACCGCCCCATCGGTGTTGGTGTTCAGGGTCTTGCCGATGCTTTCCTCG 1078063 Query 94844 TGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAA 94903 |||| |||||| || || | ||| || || |||| | | || ||||| | Sbjct 1078064 CTCTGCGCATGCCCTTTGAGTCCGCCGAGGCTCGGGAGCTGAACCAGCAGATCTTCGAGA 1078123 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG---C 94960 ||| || ||| || || || || | | |||| ||| || ||| | Sbjct 1078124 CCATCTACCACGCTGCTCTGTCGGCCTCGGTGGAGATCGCCA---AGGA-GGAGGGAACC 1078179 Query 94961 CACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGG 95020 || | | | | || || ||| | ||||| || | ||||| ||| | ||| Sbjct 1078180 TACTCCA--CCTATGAGGGCTCTCCCGTCTCTCAGGGTATCCTGCAGTTTGACATGTGGA 1078237 Query 95021 GTGTGAAGCCCTCGGGTCTGTACGACTGGGA-AG-CTCTACGCGCTGATGTTATCAA--- 95075 ||| |||||| | | || | |||||||| || || | | || | ||||| Sbjct 1078238 ATGTCAAGCCCACCGACCTCTGGGACTGGGATAGCCTGAAGGAGCAG-----ATCAAGCT 1078292 Query 95076 ACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGAT 95135 |||||||| ||| ||||| |||| ||||||||||| ||| || ||||||| Sbjct 1078293 TCACGGTGTTCGCAACAGTCTGCTGCTGGCTCCCATGCCCACTGCCAGTACCTCGCAGAT 1078352 Query 95136 CCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCT 95195 |||||||||||||||| || || || | ||||||||| | ||| | | || ||||| Sbjct 1078353 TCTTGGCAACAACGAGTGCTTTGAGCCGTACACCTCCAATATCTACCAGCGCCGTGTGCT 1078412 Query 95196 CGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTG 95254 || || || |||| || ||||| | | || || || || | || | || || Sbjct 1078413 TGCTGGAGAGTTCCAGGTGGTCAACCCGTGGTTGCTCCGCGATCTAGTCGAC-CTTGGCC 1078471 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT-- 95312 ||||| ||| | | ||||||| | | || ||||||||| |||||||||| Sbjct 1078472 TGTGGTCGGACTCGATGAAGAACCGCATCATTGCCGACAACGGCTCGATCCAGAACATTG 1078531 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || || || || | ||||||||||| || |||||||| || ||||| || | ||||| Sbjct 1078532 CCAGC--ATCCCTGCTGACATCAAGGCTCTGTACAAGACGGTCTGGGAAATTTCCCAGCG 1078589 Query 95373 C 95373 | Sbjct 1078590 C 1078590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723020662840