Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq9 167 2e-36
seq25 84.2 2e-11
>seq9
Length=477563
Score = 167 bits (184), Expect = 2e-36
Identities = 314/455 (69%), Gaps = 20/455 (4%)
Strand=Plus/Minus
Query 52391 GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGC 52450
|||| ||||| |||| ||||| ||| ||||||||| | || || ||| ||| |
Sbjct 51851 GGCC-AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTC 51793
Query 52451 CGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTT 52510
| ||||| | || || | | ||||| |||||||||||||| ||| ||||||| |
Sbjct 51792 GTCGATCTTCTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCT 51733
Query 52511 GATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT------CTACTACAAGAC 52564
||| ||||| ||||| || |||||||| ||||| || ||||| || | || |
Sbjct 51732 GATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCACCTCAA 51673
Query 52565 GCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGC 52624
|| | | || | || |||| |||| ||| || ||| || || |||||
Sbjct 51672 GCACC-GCCCCAGCAA--------GGACGTCATCCAGAGAATCATCACCGATGCCGTGGC 51622
Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCA 52684
|| || ||||||| | || | || ||||| || ||||||||||||||||| ||
Sbjct 51621 CATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGC-CA 51563
Query 52685 GTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-G 52742
| ||| ||||||||||||| || || || || ||| ||||| ||||| | |
Sbjct 51562 CCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCTCTCGGCAACG 51503
Query 52743 CCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802
||| || || ||| || ||| || || || || ||| | ||||| ||||| | |||
Sbjct 51502 ACAAGGT-CTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGGCGGC 51444
Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||||||||| || |||||||| || ||||| ||
Sbjct 51443 AAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTA 51409
>seq25
Length=4183617
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | ||| | | | |||||||| || ||||||||||||
Sbjct 2767279 CCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2767220
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| |||||| || || || || | | |||| || |||||||||||||||||
Sbjct 2767219 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGG 2767160
Query 138508 ATACCTTCTTTGTC 138521
|| || || |||||
Sbjct 2767159 ATGCCCTCCTTGTC 2767146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262220104880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |