Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 167 2e-36 seq25 84.2 2e-11 >seq9 Length=477563 Score = 167 bits (184), Expect = 2e-36 Identities = 314/455 (69%), Gaps = 20/455 (4%) Strand=Plus/Minus Query 52391 GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGC 52450 |||| ||||| |||| ||||| ||| ||||||||| | || || ||| ||| | Sbjct 51851 GGCC-AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTC 51793 Query 52451 CGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTT 52510 | ||||| | || || | | ||||| |||||||||||||| ||| ||||||| | Sbjct 51792 GTCGATCTTCTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCT 51733 Query 52511 GATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT------CTACTACAAGAC 52564 ||| ||||| ||||| || |||||||| ||||| || ||||| || | || | Sbjct 51732 GATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCCCACCTCAA 51673 Query 52565 GCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGC 52624 || | | || | || |||| |||| ||| || ||| || || ||||| Sbjct 51672 GCACC-GCCCCAGCAA--------GGACGTCATCCAGAGAATCATCACCGATGCCGTGGC 51622 Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCA 52684 || || ||||||| | || | || ||||| || ||||||||||||||||| || Sbjct 51621 CATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGC-CA 51563 Query 52685 GTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-G 52742 | ||| ||||||||||||| || || || || ||| ||||| ||||| | | Sbjct 51562 CCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCTCTCGGCAACG 51503 Query 52743 CCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 ||| || || ||| || ||| || || || || ||| | ||||| ||||| | ||| Sbjct 51502 ACAAGGT-CTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGGCGGC 51444 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| || |||||||| || ||||| || Sbjct 51443 AAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTA 51409 >seq25 Length=4183617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 2767279 CCGCCGCGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2767220 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| || || || || | | |||| || ||||||||||||||||| Sbjct 2767219 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGAGGG 2767160 Query 138508 ATACCTTCTTTGTC 138521 || || || ||||| Sbjct 2767159 ATGCCCTCCTTGTC 2767146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262220104880