Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq9 172 5e-38
seq25 116 4e-21
seq23 95.1 1e-14
seq2 82.4 7e-11
>seq9
Length=477563
Score = 172 bits (190), Expect = 5e-38
Identities = 357/521 (69%), Gaps = 19/521 (4%)
Strand=Plus/Minus
Query 47066 CATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAA--C 47123
||| |||||| | |||| |||||||| |||||||| | ||| | || | | |
Sbjct 51918 CATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGTC 51859
Query 47124 GTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGC 47183
||| || |||| | || || | || || ||| |||||||||| |||||||| ||
Sbjct 51858 GTC-CTACGGCC-AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGT 51801
Query 47184 AGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGC 47243
||| || |||| || | || || | || | ||||||||||| || || |
Sbjct 51800 GCCTTCTCGTCGATCTTCTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCC 51741
Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT---CTACTAC 47300
|||||||| |||||| | ||||| || ||||||||| |||| ||||| || || || |
Sbjct 51740 AACGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCC 51681
Query 47301 AACA-CTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAA 47357
|| | || || | | ||| ||||| || | ||| || || | ||||
Sbjct 51680 CACCTCAAGCACCGCCCCAGCAAG---GACGT---CATC--CAGAGA-ATCATCACCGAT 51630
Query 47358 GCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATG 47417
||||| ||||||||| |||||| || |||||||||||||| | | |||| |||
Sbjct 51629 GCCGTGGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATG 51570
Query 47418 AACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTA 47477
||||| |||||| |||||||||| || ||||||||||||||||| || ||
Sbjct 51569 AACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCTCTC 51510
Query 47478 AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTC 47537
| |||| | ||| | || || || ||||| || ||| | ||||| |||||
Sbjct 51509 GGCAACGACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTG 51450
Query 47538 GAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
| |||||||||||||| || |||||||| || ||||| ||
Sbjct 51449 GGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTA 51409
>seq25
Length=4183617
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| |||| || | |||||| || | || ||||| || || || ||||| || |
Sbjct 2767735 CCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767676
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||||||| |||| | ||||||||||| || ||
Sbjct 2767675 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767616
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || ||| ||| | | |||| ||| || | ||||||
Sbjct 2767615 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACC 2767556
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || ||||||||||| || || || || ||||||||
Sbjct 2767555 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || ||||| || || || ||||| || |
Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||||||| |||| | ||||||||||| || ||
Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || ||| ||| | | |||| ||| |||| ||||||
Sbjct 2767387 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACC 2767328
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || |||||||| || || || || || ||||||||
Sbjct 2767327 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| ||| | ||||| ||| || ||||| || |||||| |
Sbjct 2767928 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 2767869
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
|||| |||||||| || || || ||||||||||| ||| || ||| ||| | |||
Sbjct 2767868 AATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTT 2767809
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
| || | ||| |||| || ||||| | ||| | ||| || || |||||||| || |
Sbjct 2767808 G-TCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCA 2767750
Query 127101 CAAAAATCTGCAT 127113
| || ||||||||
Sbjct 2767749 CGAAGATCTGCAT 2767737
Score = 91.5 bits (100), Expect = 1e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| ||| | || || || || ||||| || |||
Sbjct 2767249 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCAAGCTGCTTGCCA 2767190
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||| ||||| || || ||||| ||||||||||||||| ||| ||| ||||
Sbjct 2767189 GCAAAGATCAGGCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 2767130
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| | |||| || |||| | |||||| |||| ||| | || || |||||
Sbjct 2767129 ACATTGTCGATAGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGT 2767077
>seq23
Length=4176071
Score = 95.1 bits (104), Expect = 1e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| || ||||| |||||
Sbjct 893475 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 893534
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| ||||| || || || || ||||||||||||||| ||| ||| ||||| | |||
Sbjct 893535 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 893594
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| || |||| ||| || || | ||| | || ||||| || || || || || |||
Sbjct 893595 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 893654
Query 127106 ATCTGCATGG 127115
||||||||||
Sbjct 893655 ATCTGCATGG 893664
>seq2
Length=2210479
Score = 82.4 bits (90), Expect = 7e-11
Identities = 107/148 (72%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 146060 ACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGA 146119
|| ||||||||||||| ||||| || || || || || | | | || | ||| ||||
Sbjct 1078441 ACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGT 1078382
Query 146120 ACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACG 146179
||||||| || |||||||||| || || ||||||| || | || || |||||| |
Sbjct 1078381 ACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAG 1078322
Query 146180 CCACCAGCAAAGAGTTTCTCACGCCGTG 146207
||| ||||| | ||| | || |||||
Sbjct 1078321 CCAGCAGCAGACTGTTGCGAACACCGTG 1078294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500627630960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |