Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9 172 5e-38 seq25 116 4e-21 seq23 95.1 1e-14 seq2 82.4 7e-11 >seq9 Length=477563 Score = 172 bits (190), Expect = 5e-38 Identities = 357/521 (69%), Gaps = 19/521 (4%) Strand=Plus/Minus Query 47066 CATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAA--C 47123 ||| |||||| | |||| |||||||| |||||||| | ||| | || | | | Sbjct 51918 CATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGCTGGATTCAGGACAAGGAGTC 51859 Query 47124 GTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGC 47183 ||| || |||| | || || | || || ||| |||||||||| |||||||| || Sbjct 51858 GTC-CTACGGCC-AGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGT 51801 Query 47184 AGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGC 47243 ||| || |||| || | || || | || | ||||||||||| || || | Sbjct 51800 GCCTTCTCGTCGATCTTCTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCC 51741 Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT---CTACTAC 47300 |||||||| |||||| | ||||| || ||||||||| |||| ||||| || || || | Sbjct 51740 AACGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCTCC 51681 Query 47301 AACA-CTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAA 47357 || | || || | | ||| ||||| || | ||| || || | |||| Sbjct 51680 CACCTCAAGCACCGCCCCAGCAAG---GACGT---CATC--CAGAGA-ATCATCACCGAT 51630 Query 47358 GCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATG 47417 ||||| ||||||||| |||||| || |||||||||||||| | | |||| ||| Sbjct 51629 GCCGTGGCCATTGAGCAGGAGTTCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATG 51570 Query 47418 AACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTA 47477 ||||| |||||| |||||||||| || ||||||||||||||||| || || Sbjct 51569 AACGCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCTCTC 51510 Query 47478 AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTC 47537 | |||| | ||| | || || || ||||| || ||| | ||||| ||||| Sbjct 51509 GGCAACGACAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTG 51450 Query 47538 GAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | |||||||||||||| || |||||||| || ||||| || Sbjct 51449 GGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGCGACTA 51409 >seq25 Length=4183617 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | |||||| || | || ||||| || || || ||||| || | Sbjct 2767735 CCACCACGTAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767676 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||||||| |||| | ||||||||||| || || Sbjct 2767675 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767616 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||| | | |||| ||| || | |||||| Sbjct 2767615 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCAGACGACTCGACC 2767556 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||||||||| || || || || |||||||| Sbjct 2767555 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2767509 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || || || ||||| || | Sbjct 2767507 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2767448 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||||||| |||| | ||||||||||| || || Sbjct 2767447 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 2767388 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||| | | |||| ||| |||| |||||| Sbjct 2767387 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTATCGATGGTATCCGACGACTCGACC 2767328 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| || || || || || |||||||| Sbjct 2767327 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2767281 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | ||||| ||| || ||||| || |||||| | Sbjct 2767928 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 2767869 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 |||| |||||||| || || || ||||||||||| ||| || ||| ||| | ||| Sbjct 2767868 AATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTT 2767809 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | || | ||| |||| || ||||| | ||| | ||| || || |||||||| || | Sbjct 2767808 G-TCAATGGTATCCGATGATTCCACTTCCAAGGTGATCGTCTTTCCAGTCAGAGTCTTCA 2767750 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 2767749 CGAAGATCTGCAT 2767737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| | || || || || ||||| || ||| Sbjct 2767249 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCAAGCTGCTTGCCA 2767190 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| ||||| || || ||||| ||||||||||||||| ||| ||| |||| Sbjct 2767189 GCAAAGATCAGGCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 2767130 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| || |||| | |||||| |||| ||| | || || ||||| Sbjct 2767129 ACATTGTCGATAGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGT 2767077 >seq23 Length=4176071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || ||||| ||||| Sbjct 893475 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 893534 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||| || || || || ||||||||||||||| ||| ||| ||||| | ||| Sbjct 893535 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 893594 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | || |||| ||| || || | ||| | || ||||| || || || || || ||| Sbjct 893595 ATAGTATCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTAAGGGTCTTCACGAAA 893654 Query 127106 ATCTGCATGG 127115 |||||||||| Sbjct 893655 ATCTGCATGG 893664 >seq2 Length=2210479 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 146060 ACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGA 146119 || ||||||||||||| ||||| || || || || || | | | || | ||| |||| Sbjct 1078441 ACGGGTTGACCACCTGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGT 1078382 Query 146120 ACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACG 146179 ||||||| || |||||||||| || || ||||||| || | || || |||||| | Sbjct 1078381 ACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAG 1078322 Query 146180 CCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||| ||||| | ||| | || ||||| Sbjct 1078321 CCAGCAGCAGACTGTTGCGAACACCGTG 1078294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500627630960