Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2 203 4e-47
seq9 82.4 9e-11
>seq2
Length=2210479
Score = 203 bits (224), Expect = 4e-47
Identities = 857/1338 (64%), Gaps = 33/1338 (2%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||| |||| ||||| |||||||||||||| ||||| || | || || | || |
Sbjct 1078397 TAGATATTGGAGGTGTACGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGCGAGGTACTG 1078338
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| ||||||||||| |||| || || |||||||| | ||| | | || | |||
Sbjct 1078337 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTGCGAACACCGTGAAGCTTGATCTGCTCC 1078278
Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082
|| ||| |||||||| || | | | || | | |||||| |||||||| |||
Sbjct 1078277 TTCAGGCTATCCCAGTCCCAGAGGTCGGTGGGCTTGACATTCCACATGTCAAACTGCAGG 1078218
Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142
||||| || || | || || |||||| | || || | ||||| ||| || |
Sbjct 1078217 ATACCCTGAGAGACGGGAGAGCCCTCATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATC 1078158
Query 116143 TCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 116199
|| ||| || | || || ||||| || || ||||| || || | ||||
Sbjct 1078157 TCCACCGAGGCCGAC---AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGCTGGTTCAGC 1078101
Query 116200 GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACC 116258
|| |||||| |||| ||||| | | || || | | || |||| || |||||
Sbjct 1078100 TCCCGAGCCTCGGCGGACTCAAAGGGCATGCG-CAGAGCGAGGAAAGCATCGGCAAGACC 1078042
Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CAC 116315
|| ||||| | || || ||||| || | ||| || || ||||| ||| |||
Sbjct 1078041 CTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC---CTCGGGCAC 1077985
Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375
||| || || ||| || | | || || || | || ||| | |||| ||
Sbjct 1077984 GGGGTAGTGGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCACCATGGTGACCTC 1077925
Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435
|| ||||| || | ||| | || | | | | || || || || ||||
Sbjct 1077924 GTGCAGCTTCTCAAAGTCATACACGCCCTTGTTGTAGTCAACGTAGGCGGGCAGAGCGAG 1077865
Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495
|| ||||| || ||||||| |||||| | | |||||| || || || || ||
Sbjct 1077864 GGAGGCCAGGTTGCACACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCA 1077805
Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555
|| || || || |||||| |||| |||||| || || ||| ||| || ||
Sbjct 1077804 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTC 1077745
Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614
|||||| ||||| | || | || ||||| || || | || ||| || || | ||| |
Sbjct 1077744 CTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAG 1077685
Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGG---CTCGCCCCTCCTCCTCGTACTTTGTGTAGA 116671
| || | | || | ||| ||| | || ||||| |||||||||| ||| |
Sbjct 1077684 CTTCTGAGCCTTGA----TGGTCTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACA 1077629
Query 116672 GGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAG 116730
||||||| ||||| || || ||| || | || || || || | || || |
Sbjct 1077628 GGGCCTCGAACTCCTCGCCGT-AGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATC 1077570
Query 116731 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790
|||| ||| | | || ||| || |||||||||||||| || |||||||| || |||
Sbjct 1077569 AGAGTCCACTCGGCGTTCTTCTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCC 1077510
Query 116791 GAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850
||| | ||| | ||| | || || | || ||||| |||| |||| ||
Sbjct 1077509 AGGAACAAATCTCTGGCGCGGACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAAC 1077450
Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA--- 116907
|| | | || ||||||||||| || ||||| | || | | || |||
Sbjct 1077449 TCGAACACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTG 1077390
Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967
|| |||||| ||||| | || || ||| || ||||||||||| || |||||||||
Sbjct 1077389 CCGCCCTGGTCAACATAGCGGGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCA 1077330
Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027
| || |||||| || || |||| ||| | | || | || | ||||| |
Sbjct 1077329 TTGGACGTGCCATTGGTTCCGGCAATATAAGAACCGGTAGCACGGATACGGTGGACATTG 1077270
Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087
| |||||| || || ||| ||| ||||| ||||| | |||| || | |||||
Sbjct 1077269 AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCATAGATA 1077210
Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT-GG 117146
|| || || |||| |||| | | | |||||||| ||| | || ||||| ||
Sbjct 1077209 CCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCACGACGAGAGCTG-GGCCTGCGG 1077151
Query 117147 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTA 117204
|||||||||||||||||||| || | || ||| ||| | | |||| |||||||
Sbjct 1077150 GGTACCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACATCAAG 1077093
Query 117205 TCGTAGGTCTCCAAGACA 117222
| ||||||||| | ||||
Sbjct 1077092 TTGTAGGTCTCGATGACA 1077075
>seq9
Length=477563
Score = 82.4 bits (90), Expect = 9e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| |||||||||||||| ||||| || || || |||||| ||| || ||||| | ||
Sbjct 51708 GTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCATGCC 51767
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| |||| | || | || ||||||||| ||||| ||
Sbjct 51768 GCGCTTCTTGATCCAGAAGATCGACGAGAAGGCACCGCTGAAGAAGATGCCCTCGACGGC 51827
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCG 127709
|| || |||| || |||| | | |||| || | |||| | || ||| || |
Sbjct 51828 GGCAAAGGCAACCAGGCGCTGGCCGTAGGA-CGACTCCTTGTCCTGAATCCAGCGGATGG 51886
Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761
|||| | ||||| || ||| || |||| ||| | || || | |||||
Sbjct 51887 CCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCAATGGCGTTGAAGAG 51938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506977603640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |