Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11]
29 sequences; 35,537,816 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 9e-38
>seq2
Length=2210479
Score = 172 bits (190), Expect = 9e-38
Identities = 452/679 (67%), Gaps = 8/679 (1%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAAT-GGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897
|||||| || |||||||| || |||| | | |||| | | | | || ||||||||||
Sbjct 1078785 CTTGTCAACAGTGAACTGGATAGGCGC-CGCAGCAGCCTGGGTACGGAGGTAGTACATGC 1078727
Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957
||||||| || || || ||| ||| | ||||||| | | |||| || |||
Sbjct 1078726 CGGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGG 1078667
Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017
|||| |||||| |||||||||||||| ||||| ||||||| | ||||| || |
Sbjct 1078666 GGTCCTTCATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGATCGGCAG 1078607
Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077
|||| | | | || ||| ||||| ||||| ||||||||| ||| | || |||
Sbjct 1078606 CCATCTGCACGACAGTGCGCTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATGT 1078547
Query 204078 GTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136
||| | || | | || || |||||||||||||||||| || | | || ||
Sbjct 1078546 CAGCAGGGA-TGCTGGCAATGTTCTGGATCGAGCCGTTGTCGGCAATGATGCGGTTCTTC 1078488
Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196
|| ||| ||||| ||| | || || || || | || ||||||| | |
Sbjct 1078487 ATCGAGTCCGACCACAGGCCAAGGTCGACTAGATCGCGGAGCAACCACGGGTTGACCACC 1078428
Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256
|| || ||||| | ||||| | || | | | ||| |||| | || || || |
Sbjct 1078427 TGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGGCTCAAAGCAC 1078368
Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316
||||||||||| | |||||| | ||| ||||| ||||||||||||||||| ||||| |
Sbjct 1078367 TCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTG 1078308
Query 204317 TTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375
||||| ||||||| | || |||| |||||| |||||| | | |
Sbjct 1078307 TTGCGAACACCGTGAAGCTTGA-TCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGGT 1078249
Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435
||| || || ||||||||| ||||| | ||| || ||| ||| || ||||| ||
Sbjct 1078248 GGGCTTGACATTCCACATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATA 1078189
Query 204436 CGTCGGATAAGGCT-GATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGT 204494
|| ||| ||| | ||||| | || | || |||||| | || || | ||
Sbjct 1078188 GGT-GGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACCGAGGCCGACAGAGCAGCGTGGT 1078130
Query 204495 ACATGGTCTCAAAGATCTG 204513
| |||||||| ||||||||
Sbjct 1078129 AGATGGTCTCGAAGATCTG 1078111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154911756240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |