Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 172 9e-38 >seq2 Length=2210479 Score = 172 bits (190), Expect = 9e-38 Identities = 452/679 (67%), Gaps = 8/679 (1%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAAT-GGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||||| || |||||||| || |||| | | |||| | | | | || |||||||||| Sbjct 1078785 CTTGTCAACAGTGAACTGGATAGGCGC-CGCAGCAGCCTGGGTACGGAGGTAGTACATGC 1078727 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 ||||||| || || || ||| ||| | ||||||| | | |||| || ||| Sbjct 1078726 CGGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGG 1078667 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 |||| |||||| |||||||||||||| ||||| ||||||| | ||||| || | Sbjct 1078666 GGTCCTTCATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGATCGGCAG 1078607 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| | | | || ||| ||||| ||||| ||||||||| ||| | || ||| Sbjct 1078606 CCATCTGCACGACAGTGCGCTGGGAAATTTCCCAGACCGTCTTGTACAGAGCCTTGATGT 1078547 Query 204078 GTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 ||| | || | | || || |||||||||||||||||| || | | || || Sbjct 1078546 CAGCAGGGA-TGCTGGCAATGTTCTGGATCGAGCCGTTGTCGGCAATGATGCGGTTCTTC 1078488 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 || ||| ||||| ||| | || || || || | || ||||||| | | Sbjct 1078487 ATCGAGTCCGACCACAGGCCAAGGTCGACTAGATCGCGGAGCAACCACGGGTTGACCACC 1078428 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || ||||| | ||||| | || | | | ||| |||| | || || || | Sbjct 1078427 TGGAACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGGCTCAAAGCAC 1078368 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||||||||| | |||||| | ||| ||||| ||||||||||||||||| ||||| | Sbjct 1078367 TCGTTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTG 1078308 Query 204317 TTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||| ||||||| | || |||| |||||| |||||| | | | Sbjct 1078307 TTGCGAACACCGTGAAGCTTGA-TCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGGT 1078249 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435 ||| || || ||||||||| ||||| | ||| || ||| ||| || ||||| || Sbjct 1078248 GGGCTTGACATTCCACATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCTCATA 1078189 Query 204436 CGTCGGATAAGGCT-GATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGT 204494 || ||| ||| | ||||| | || | || |||||| | || || | || Sbjct 1078188 GGT-GGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACCGAGGCCGACAGAGCAGCGTGGT 1078130 Query 204495 ACATGGTCTCAAAGATCTG 204513 | |||||||| |||||||| Sbjct 1078129 AGATGGTCTCGAAGATCTG 1078111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154911756240